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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001290759.1 → NP_001277688.1 TBC1 domain family member 9B isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
- Source sequence(s)
-
AK049999, BC065130, BY207144
- UniProtKB/Swiss-Prot
-
Q5SVR0
- Conserved Domains (4) summary
-
- smart00054
Location:886 → 911
- EFh; EF-hand, calcium binding motif
- smart00164
Location:506 → 716
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
- cd13354
Location:299 → 394
- PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
- cd13351
Location:153 → 251
- PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1
-
NM_001290760.1 → NP_001277689.1 TBC1 domain family member 9B isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK049999, BC065130, BY207144
- Consensus CDS
-
CCDS70175.1
- UniProtKB/Swiss-Prot
- Q3UGF5, Q5SVR0, Q6A019, Q6P1G9, Q6PDP2, Q80ZU6, Q8C7K9, Q8CBR7, Q8CCW2, Q9CSQ2
- Related
- ENSMUSP00000098828.5, ENSMUST00000101270.5
- Conserved Domains (5) summary
-
- smart00054
Location:887 → 912
- EFh; EF-hand, calcium binding motif
- smart00164
Location:506 → 716
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
- cd13354
Location:299 → 394
- PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
- cd13351
Location:153 → 251
- PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1
- cl08302
Location:856 → 907
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
-
NM_029745.2 → NP_084021.2 TBC1 domain family member 9B isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an exon in the central coding region but maintains reading frame, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1.
- Source sequence(s)
-
AK035457, BC058596, BY207144
- Consensus CDS
-
CCDS36146.1
- UniProtKB/Swiss-Prot
-
Q5SVR0
- Related
- ENSMUSP00000090825.7, ENSMUST00000093138.13
- Conserved Domains (5) summary
-
- smart00054
Location:887 → 912
- EFh; EF-hand, calcium binding motif
- smart00164
Location:506 → 716
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
- cd13354
Location:299 → 394
- PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
- cd13351
Location:153 → 251
- PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1
- cl08302
Location:856 → 907
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
50021891..50063612
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036157082.1 → XP_036012975.1 TBC1 domain family member 9B isoform X2
- Conserved Domains (4) summary
-
- smart00054
Location:887 → 912
- EFh; EF-hand, calcium binding motif
- smart00164
Location:506 → 716
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
- cd13354
Location:299 → 394
- PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
- cd13351
Location:153 → 251
- PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1
-
XM_006534458.5 → XP_006534521.1 TBC1 domain family member 9B isoform X1
- Conserved Domains (4) summary
-
- smart00054
Location:887 → 912
- EFh; EF-hand, calcium binding motif
- smart00164
Location:506 → 716
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
- cd13354
Location:299 → 394
- PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
- cd13351
Location:153 → 251
- PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1
-
XM_036157083.1 → XP_036012976.1 TBC1 domain family member 9B isoform X3
- Conserved Domains (3) summary
-
- smart00054
Location:565 → 590
- EFh; EF-hand, calcium binding motif
- smart00164
Location:184 → 394
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
- cl17171
Location:1 → 72
- PH-like; Pleckstrin homology-like domain
RNA
-
XR_388552.5 RNA Sequence
-
XR_388553.5 RNA Sequence
-
XR_001780074.3 RNA Sequence
-
XR_001780075.3 RNA Sequence