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    Utf1 undifferentiated embryonic cell transcription factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 22286, updated on 9-Dec-2024

    Summary

    Official Symbol
    Utf1provided by MGI
    Official Full Name
    undifferentiated embryonic cell transcription factor 1provided by MGI
    Primary source
    MGI:MGI:1276125
    See related
    Ensembl:ENSMUSG00000047751 AllianceGenome:MGI:1276125
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables HMG box domain binding activity; TBP-class protein binding activity; and transcription coactivator activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including early conceptus; embryo ectoderm; gonad; and limb mesenchyme. Orthologous to human UTF1 (undifferentiated embryonic cell transcription factor 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in placenta adult (RPKM 7.2), thymus adult (RPKM 4.4) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Utf1 in Genome Data Viewer
    Location:
    7 F4; 7 84.91 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (139523769..139525025)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (139943856..139945112)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S2 pseudogene Neighboring gene kinase non-catalytic C-lobe domain (KIND) containing 1 Neighboring gene STARR-seq mESC enhancer starr_20433 Neighboring gene STARR-seq mESC enhancer starr_20437 Neighboring gene predicted gene 16201 Neighboring gene microRNA 7686 Neighboring gene microRNA 202

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    undifferentiated embryonic cell transcription factor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009482.2NP_033508.1  undifferentiated embryonic cell transcription factor 1

      See identical proteins and their annotated locations for NP_033508.1

      Status: PROVISIONAL

      Source sequence(s)
      AC107822
      Consensus CDS
      CCDS21958.1
      UniProtKB/Swiss-Prot
      O70530, Q6J1H4
      UniProtKB/TrEMBL
      B2RSF1
      Related
      ENSMUSP00000128848.3, ENSMUST00000168457.3
      Conserved Domains (1) summary
      pfam13837
      Location:79126
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      139523769..139525025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)