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    Mrps16 mitochondrial ribosomal protein S16 [ Mus musculus (house mouse) ]

    Gene ID: 66242, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mrps16provided by MGI
    Official Full Name
    mitochondrial ribosomal protein S16provided by MGI
    Primary source
    MGI:MGI:1913492
    See related
    Ensembl:ENSMUSG00000049960 AllianceGenome:MGI:1913492
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S16mt; Mprs16; 1500011E11Rik
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including central nervous system; early conceptus; gonad; liver; and retina. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 2. Orthologous to human MRPS16 (mitochondrial ribosomal protein S16). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 80.7), kidney adult (RPKM 66.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Mrps16 in Genome Data Viewer
    Location:
    14 A3; 14 11.53 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (20441290..20443702, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (20391222..20393634, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 149, member B Neighboring gene predicted gene, 30054 Neighboring gene STARR-positive B cell enhancer ABC_E7296 Neighboring gene STARR-positive B cell enhancer ABC_E11564 Neighboring gene STARR-positive B cell enhancer ABC_E3105 Neighboring gene DnaJ heat shock protein family (Hsp40) member C9 Neighboring gene RIKEN cDNA 7330404K18 gene Neighboring gene cilia and flagella associated protein 70 Neighboring gene STARR-seq mESC enhancer starr_36110 Neighboring gene annexin A7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in mitochondrial translation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial inner membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    part_of mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of mitochondrial small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    part_of mitochondrial small ribosomal subunit NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    small ribosomal subunit protein bS16m
    Names
    28S ribosomal protein S16, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025440.3NP_079716.1  small ribosomal subunit protein bS16m precursor

      See identical proteins and their annotated locations for NP_079716.1

      Status: VALIDATED

      Source sequence(s)
      AC121801, AK005206, BY108330
      Consensus CDS
      CCDS36817.1
      UniProtKB/Swiss-Prot
      Q9CPX7
      Related
      ENSMUSP00000055619.4, ENSMUST00000061444.5
      Conserved Domains (1) summary
      TIGR00002
      Location:1797
      S16; ribosomal protein S16

    RNA

    1. NR_155747.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121801
      Related
      ENSMUST00000224286.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      20441290..20443702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)