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    CG1103 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40547, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG1103provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0037235
    Locus tag
    Dmel_CG1103
    See related
    AllianceGenome:FB:FBgn0037235
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-WO0118547.152; Dmel\CG1103
    Summary
    Is expressed in several structures, including anterior endoderm; embryonic epipharynx; embryonic hypopharynx; endoderm anlage; and gut section. Human ortholog(s) of this gene implicated in Usher syndrome type 3A; autosomal recessive nonsyndromic deafness; and retinitis pigmentosa 61. Orthologous to human CLRN1 (clarin 1); CLRN2 (clarin 2); and CLRN3 (clarin 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG1103 in Genome Data Viewer
    Location:
    82A4-82A4; 3-47.1 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (4337755..4339914)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (163477..165636)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene S-phase kinase-associated protein 2 Neighboring gene huckebein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Using Drosophila to study mechanisms of hereditary hearing loss. Li T, et al. Dis Model Mech, 2018 May 31. PMID 29853544, Free PMC Article
    2. Neurophysiological defects and neuronal gene deregulation in Drosophila mir-124 mutants. Sun K, et al. PLoS Genet, 2012 Feb. PMID 22347817, Free PMC Article
    3. Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster. Erkosar B, et al. mBio, 2017 Oct 24. PMID 29066546, Free PMC Article
    4. Comparative exploration of mammalian deafness gene homologues in the Drosophila auditory organ shows genetic correlation between insect and vertebrate hearing. Sutton DC, et al. PLoS One, 2024. PMID 38412189, Free PMC Article
    5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG1103-PA
    CG1103-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      4337755..4339914
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141199.4 → NP_649456.3  uncharacterized protein Dmel_CG1103, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649456.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960K3, Q9VN09
      Related
      FBpp0078549
      Conserved Domains (1) summary
      pfam13903
      Location:22 → 203
      Claudin_2; PMP-22/EMP/MP20/Claudin tight junction

    2. NM_001043195.3 → NP_001036660.1  uncharacterized protein Dmel_CG1103, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036660.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960K3, Q9VN09
      Conserved Domains (1) summary
      pfam13903
      Location:22 → 203
      Claudin_2; PMP-22/EMP/MP20/Claudin tight junction
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q960K3 Q960K3

    Gene LinkOut

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