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    HP1D3csd Heterochromatin Protein 1D3 chromoshadow domain [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32906, updated on 9-Dec-2024

    Summary

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    Official Symbol
    HP1D3csdprovided by FlyBase
    Official Full Name
    Heterochromatin Protein 1D3 chromoshadow domainprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030994
    Locus tag
    Dmel_CG14193
    See related
    AllianceGenome:FB:FBgn0030994
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG14193; Dmel\CG14193; HP1
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in chromosome organization. Predicted to be located in chromatin. Is expressed in germline cell and gonad. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See HP1D3csd in Genome Data Viewer
    Location:
    18A6-18A7; 1-62 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (19190214..19191029)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (19084247..19085062)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Mec2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stellate Genes and the piRNA Pathway in Speciation and Reproductive Isolation of Drosophila melanogaster. Adashev VE, et al. Front Genet, 2020. PMID 33584811, Free PMC Article
    2. The histone code reader PHD finger protein 7 controls sex-linked disparities in gene expression and malignancy in Drosophila. Molnar C, et al. Sci Adv, 2019 Aug. PMID 31453329, Free PMC Article
    3. Germline masculinization by Phf7 in D. melanogaster requires its evolutionarily novel C-terminus and the HP1-family protein HP1D3csd. Yang SY. Sci Rep, 2021 Mar 18. PMID 33737548, Free PMC Article
    4. Msl3 promotes germline stem cell differentiation in female Drosophila. McCarthy A, et al. Development, 2022 Jan 1. PMID 34878097, Free PMC Article
    5. Phylogenomic analysis reveals dynamic evolutionary history of the Drosophila heterochromatin protein 1 (HP1) gene family. Levine MT, et al. PLoS Genet, 2012. PMID 22737079, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Germline masculinization by Phf7 in D. melanogaster requires its evolutionarily novel C-terminus and the HP1-family protein HP1D3csd.
      Title: Germline masculinization by Phf7 in D. melanogaster requires its evolutionarily novel C-terminus and the HP1-family protein HP1D3csd.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromosome organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromatin ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterochromatin protein 1D3 chromoshadow domain
    Names
    CG14193-PA
    HP1D3csd-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      19190214..19191029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_133130.3 → NP_573358.1  heterochromatin protein 1D3 chromoshadow domain [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_573358.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VWK9
      Related
      FBpp0074441
      Conserved Domains (1) summary
      pfam07423
      Location:3 → 61
      DUF1510; Protein of unknown function (DUF1510)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VWK9 Q9VWK9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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