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    CG32104 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39413, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG32104provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0052104
    Locus tag
    Dmel_CG32104
    See related
    AllianceGenome:FB:FBgn0052104
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-69Ag; CG14123; CG14124; Dmel\CG32104
    Summary
    Predicted to be involved in transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human RPAP1 (RNA polymerase II associated protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG32104 in Genome Data Viewer
    Location:
    69B4-69B4; 3-38 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12393804..12399322, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12386904..12392422, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Corazonin receptor Neighboring gene sodium chloride cotransporter 69 Neighboring gene long non-coding RNA:CR45824 Neighboring gene Odorant-binding protein 69a Neighboring gene SET and MYND domain containing, class 4, member 2 Neighboring gene Short Calcium-binding Mitochondrial Carrier

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Combining mapping and arraying: An approach to candidate gene identification. Wayne ML, et al. Proc Natl Acad Sci U S A, 2002 Nov 12. PMID 12415114, Free PMC Article
    2. The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster. Jehrke L, et al. Sci Rep, 2018 Apr 18. PMID 29670218, Free PMC Article
    3. Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster. Juneja P, et al. BMC Genomics, 2016 Nov 28. PMID 27894253, Free PMC Article
    4. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article
    5. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG32104-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      12393804..12399322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140316.3 → NP_648573.2  uncharacterized protein Dmel_CG32104 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648573.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      C8VUZ8, Q9VTX1
      Related
      FBpp0075718
      Conserved Domains (2) summary
      pfam08620
      Location:319 → 390
      RPAP1_C; RPAP1-like, C-terminal
      pfam08621
      Location:193 → 234
      RPAP1_N; RPAP1-like, N-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NHD0 Q9NHD0
    Q9VTX1 Q9VTX1

    Gene LinkOut

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