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    a6 a6 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31127, updated on 9-Dec-2024

    Summary

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    Official Symbol
    a6provided by FlyBase
    Official Full Name
    a6provided by FlyBase
    Primary source
    FLYBASE:FBgn0023130
    Locus tag
    Dmel_CG3771
    See related
    AllianceGenome:FB:FBgn0023130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG3771; Dmel\CG3771; EG:9D2.3
    Summary
    Involved in embryonic development via the syncytial blastoderm. Is expressed in embryonic/larval midgut; larval muscle system; and organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    Location:
    2B7-2B7; 1-0.2 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1693615..1695889, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1587648..1589922, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene b6 Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Sarcoglycan delta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Comparison of the molecular and genetic map of the 2B6-2B7-8 of Drosophila melanogaster X-chromosome]. Makunin IV, et al. Genetika, 1999 Aug. PMID 10546111
    2. From sequence to chromosome: the tip of the X chromosome of D. melanogaster. Benos PV, et al. Science, 2000 Mar 24. PMID 10731137
    3. Molecular characterization of the singed wings locus of Drosophila melanogaster. Schwartz YB, et al. BMC Genet, 2004 Jun 9. PMID 15189568, Free PMC Article
    4. A network model of the molecular organization of chromatin in Drosophila. van Bemmel JG, et al. Mol Cell, 2013 Feb 21. PMID 23438860
    5. From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Benos PV, et al. Genome Res, 2001 May. PMID 11337470, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in embryonic development via the syncytial blastoderm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    a6
    Names
    CG3771-PA
    CG3771-PB
    CG3771-PC
    a6-PA
    a6-PB
    a6-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1693615..1695889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001272213.1 → NP_001259142.1  a6, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259142.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O46341, Q9W564
      UniProtKB/TrEMBL
      M9PDH8
      Conserved Domains (1) summary
      pfam09727
      Location:29 → 78
      CortBP2; Cortactin-binding protein-2

    2. NM_057961.5 → NP_477309.1  a6, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_477309.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O46341, Q9W564
      UniProtKB/TrEMBL
      M9PDH8
      Related
      FBpp0070269
      Conserved Domains (1) summary
      pfam09727
      Location:29 → 78
      CortBP2; Cortactin-binding protein-2

    3. NM_001272212.1 → NP_001259141.1  a6, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259141.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O46341, Q9W564
      UniProtKB/TrEMBL
      M9PDH8
      Conserved Domains (1) summary
      pfam09727
      Location:29 → 78
      CortBP2; Cortactin-binding protein-2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PDH8 M9PDH8
    O46341.1 O46341

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