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    gidB 16S rRNA methyltransferase GidB [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 877778, updated on 24-Aug-2024

    Summary

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    Gene symbol
    gidB
    Gene description
    16S rRNA methyltransferase GidB
    Locus tag
    PA5564
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (6256661..6257305, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene chromosome partitioning protein Neighboring gene chromosome partitioning protein Soj Neighboring gene tRNA uridine 5-carboxymethylaminomethyl modification protein GidA Neighboring gene hypothetical protein Neighboring gene tRNA modification GTPase TrmE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Loss of a conserved 7-methylguanosine modification in 16S rRNA confers low-level streptomycin resistance in bacteria. Okamoto S, et al. Mol Microbiol, 2007 Feb. PMID 17238915
    2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Function Evidence Code Pubs
    enables methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables rRNA (guanine-N7-)-methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA base methylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    16S rRNA methyltransferase GidB
    NP_254251.1
    • Product name confidence: class 2 (High similarity to functionally studied protein)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      6256661..6257305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_254251.1 16S rRNA methyltransferase GidB [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_254251.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9HT10
      Conserved Domains (1) summary
      PRK00107
      Location:30 → 213
      gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9HT10.1

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