1700109H08Rik RIKEN cDNA 1700109H08 gene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: 1700109H08Rikprovided by MGI
Official Full Name: RIKEN cDNA 1700109H08 geneprovided by MGI
Primary source: MGI:MGI:1924286
See related: Ensembl:ENSMUSG00000008307 AllianceGenome:MGI:1924286
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of signal transduction. [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in testis adult (RPKM 7.9), CNS E11.5 (RPKM 2.4) and 12 other tissues See more
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Genomic context

Location:: 5 A1; 5 2.24 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (3621716..3634341)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (3571716..3584341)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH125879 (e-PCR)
- UniSTS:162611

AW548102 (e-PCR)
- UniSTS:179125

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables calcium ion binding	IBA Inferred from Biological aspect of Ancestor more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in regulation of signal transduction	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein LOC77036

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_029843.3 → NP_084119.1 uncharacterized protein LOC77036

See identical proteins and their annotated locations for NP_084119.1

Status: PREDICTED

Source sequence(s)

AC090443

Consensus CDS

CCDS39001.1

UniProtKB/TrEMBL

Q9D9C0

Related

ENSMUSP00000008451.6, ENSMUST00000008451.12

Conserved Domains (2) summary

pfam13499
Location:105 → 174

EF-hand_7; EF-hand domain pair

cl08302
Location:71 → 130

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...