U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    1700112D23Rik RIKEN cDNA 1700112D23 gene [ Mus musculus (house mouse) ]

    Gene ID: 73611, updated on 22-Oct-2024

    Summary

    Official Symbol
    1700112D23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700112D23 geneprovided by MGI
    Primary source
    MGI:MGI:1920861
    See related
    Ensembl:ENSMUSG00000091329 AllianceGenome:MGI:1920861
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 5.8), placenta adult (RPKM 0.4) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 1700112D23Rik in Genome Data Viewer
    Location:
    3 A3; 3 12.19 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (28756372..28835271, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (28702223..28781122, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene TRAF2 and NCK interacting kinase Neighboring gene microRNA 466q Neighboring gene VISTA enhancer mm492 Neighboring gene STARR-seq mESC enhancer starr_07263 Neighboring gene STARR-seq mESC enhancer starr_07264 Neighboring gene STARR-seq mESC enhancer starr_07265 Neighboring gene predicted gene, 52603 Neighboring gene solute carrier family 2 (facilitated glucose transporter), member 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:28679958-28680067 Neighboring gene STARR-positive B cell enhancer ABC_E6046 Neighboring gene predicted pseudogene 6505 Neighboring gene eukaryotic translation initiation factor 5A2 Neighboring gene predicted gene, 32950 Neighboring gene ribosomal protein L22 like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_166152.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121268, AC122490
      Related
      ENSMUST00000167704.3
    2. NR_166153.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121268, AC122490
      Related
      ENSMUST00000293021.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      28756372..28835271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)