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    RpS16 Ribosomal protein S16 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37580, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RpS16provided by FlyBase
    Official Full Name
    Ribosomal protein S16provided by FlyBase
    Primary source
    FLYBASE:FBgn0034743
    Locus tag
    Dmel_CG4046
    See related
    AllianceGenome:FB:FBgn0034743
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    bs32d05.y1; CG4046; Dmel\CG4046; Rp S16; S16; S9
    Summary
    A structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in cytosolic ribosome. Is expressed in adult head; adult heart; and organism. Orthologous to human RPS16 (ribosomal protein S16). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See RpS16 in Genome Data Viewer
    Location:
    58F1-58F1; 2-100 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22605745..22607995)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18493250..18495500)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45328 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Vacuolar protein sorting 20 Neighboring gene testes of unusual size Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The mapping of Drosophila melanogaster mutant A.4.4. Bieser K, et al. MicroPubl Biol, 2018 Dec 17. PMID 32550366, Free PMC Article
    2. Small ribonucleoprotein particle protein SmD3 governs the homeostasis of germline stem cells and the crosstalk between the spliceosome and ribosome signals in Drosophila. Yu J, et al. FASEB J, 2019 Jul. PMID 30921522
    3. Srlp is crucial for the self-renewal and differentiation of germline stem cells via RpL6 signals in Drosophila testes. Yu J, et al. Cell Death Dis, 2019 Apr 1. PMID 30931935, Free PMC Article
    4. The Ribosomal Protein RpL22 Interacts In Vitro with 5'-UTR Sequences Found in Some Drosophila melanogaster Transposons. Minervini CF, et al. Genes (Basel), 2022 Feb 5. PMID 35205350, Free PMC Article
    5. RpS13 controls the homeostasis of germline stem cell niche through Rho1-mediated signals in the Drosophila testis. Wang M, et al. Cell Prolif, 2020 Oct. PMID 32896929, Free PMC Article

    See all (69) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome HDA PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in cytoplasmic translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosolic ribosome HDA PubMed 
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein S16
    Names
    CG4046-PA
    CG4046-PB
    RpS16-PA
    RpS16-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      22605745..22607995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299802.1 → NP_001286731.1  ribosomal protein S16, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286731.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9W237
      UniProtKB/TrEMBL
      A0A0B4LG52
      Conserved Domains (1) summary
      PTZ00086
      Location:2 → 148
      PTZ00086; 40S ribosomal protein S16; Provisional

    2. NM_137841.4 → NP_611685.1  ribosomal protein S16, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611685.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9W237
      UniProtKB/TrEMBL
      A0A0B4LG52
      Related
      FBpp0071766
      Conserved Domains (1) summary
      PTZ00086
      Location:2 → 148
      PTZ00086; 40S ribosomal protein S16; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4LG52 A0A0B4LG52
    Q9W237.1 Q9W237

    Gene LinkOut

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