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    Vom2r-ps45 vomeronasal 2 receptor, pseudogene 45 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 286982, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Vom2r-ps45provided by RGD
    Official Full Name
    vomeronasal 2 receptor, pseudogene 45provided by RGD
    Primary source
    RGD:708402
    See related
    EnsemblRapid:ENSRNOG00000075332 AllianceGenome:RGD:708402
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in G protein-coupled receptor signaling pathway. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Vom2r-ps45 in Genome Data Viewer
    Location:
    1q12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (75496310..75523783)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (66463177..66490650)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (69496309..69523063)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 31 Neighboring gene vomeronasal 2 receptor, pseudogene 44 Neighboring gene proteasome activator subunit 3, pseudogene 1 Neighboring gene defective in cullin neddylation 1 domain containing 3, pseudogene 1 Neighboring gene proteasome activator complex subunit 3 pseudogene Neighboring gene vomeronasal 2 receptor, 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution. Herrada G, et al. Cell, 1997 Aug 22. PMID 9288755
    2. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    3. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, et al. Nature, 2004 Apr 1. PMID 15057822
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • putative pheromone receptor (Go-VN6)
    • vomeronasal 2 receptor 45 pseudogene

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_006466.4 

      Range
      101..27574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      75496310..75523783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_173316.1: Suppressed sequence

      Description
      NM_173316.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.