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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008295.1 RefSeqGene
- Range
-
3327..56194
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_109
mRNA and Protein(s)
-
NM_001185015.2 → NP_001171944.1 sp110 nuclear body protein isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (d) has an alternate 5' sequence, lacks multiple 3' exons and has an alternate 3' exon, compared to variant c. The resulting protein (isoform d) has a longer N-terminus and a shorter and distinct C-terminus when it is compared to isoform c.
- Source sequence(s)
-
AC009950, AK301097, BC019059
- Consensus CDS
-
CCDS54435.1
- UniProtKB/TrEMBL
-
G5E9C0
- Related
- ENSP00000439558.1, ENST00000540870.5
- Conserved Domains (2) summary
-
- pfam01342
Location:465 → 540
- SAND; SAND domain
- pfam03172
Location:17 → 110
- Sp100; Sp100 domain
-
NM_001378442.1 → NP_001365371.1 sp110 nuclear body protein isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC009950
- Conserved Domains (4) summary
-
- cd15626
Location:542 → 583
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:465 → 538
- SAND; SAND domain
- pfam03172
Location:14 → 112
- HSR; HSR domain
- cl02556
Location:574 → 733
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
NM_001378443.1 → NP_001365372.1 sp110 nuclear body protein isoform f
Status: REVIEWED
- Source sequence(s)
-
AC009950
- Conserved Domains (4) summary
-
- cd15626
Location:536 → 577
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:459 → 532
- SAND; SAND domain
- pfam03172
Location:8 → 106
- HSR; HSR domain
- cl02556
Location:568 → 727
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
NM_001378444.1 → NP_001365373.1 sp110 nuclear body protein isoform g
Status: REVIEWED
- Source sequence(s)
-
AC009950
- Conserved Domains (4) summary
-
- cd05501
Location:607 → 707
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:542 → 583
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:465 → 538
- SAND; SAND domain
- pfam03172
Location:14 → 112
- HSR; HSR domain
-
NM_001378445.1 → NP_001365374.1 sp110 nuclear body protein isoform h
Status: REVIEWED
- Source sequence(s)
-
AC009950
- Conserved Domains (4) summary
-
- cd15626
Location:542 → 583
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:465 → 538
- SAND; SAND domain
- pfam03172
Location:14 → 112
- HSR; HSR domain
- cl02556
Location:574 → 683
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
NM_001378446.1 → NP_001365375.1 sp110 nuclear body protein isoform i
Status: REVIEWED
- Source sequence(s)
-
AC009950
- UniProtKB/TrEMBL
-
A0A8V8TLE9
- Conserved Domains (4) summary
-
- cd15626
Location:542 → 583
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:465 → 538
- SAND; SAND domain
- pfam03172
Location:14 → 112
- HSR; HSR domain
- cl02556
Location:574 → 636
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
NM_001378447.1 → NP_001365376.1 sp110 nuclear body protein isoform j
Status: REVIEWED
- Source sequence(s)
-
AC009950
- UniProtKB/TrEMBL
-
A0A8V8TMX7
- Related
- ENSP00000513567.1, ENST00000698103.1
- Conserved Domains (2) summary
-
- pfam01342
Location:409 → 484
- SAND; SAND domain
- pfam03172
Location:8 → 106
- HSR; HSR domain
-
NM_004509.5 → NP_004500.4 sp110 nuclear body protein isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (a) lacks an internal alternate exon in the 3' coding region, compared to variant c. The resulting protein (isoform a) has a truncated bromodomain region when it is compared to isoform c.
- Source sequence(s)
-
AC009950
- Consensus CDS
-
CCDS2474.1
- UniProtKB/Swiss-Prot
- B4DVI4, F5H1M1, Q14976, Q14977, Q53TG2, Q8WUZ6, Q9HB58, Q9HCT8
- Related
- ENSP00000351488.4, ENST00000358662.9
- Conserved Domains (5) summary
-
- cd15626
Location:536 → 577
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:463 → 532
- SAND; SAND domain
- pfam03172
Location:8 → 106
- HSR; HSR domain
- pfam05110
Location:171 → 380
- AF-4; AF-4 proto-oncoprotein
- cl02556
Location:568 → 677
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
NM_004510.4 → NP_004501.4 sp110 nuclear body protein isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (b) uses an alternate exon for the 3' coding region and 3' UTR, as compared to variant c. The encoded protein (isoform b) has a shorter and distinct C-terminus and lacks the bromodomain when it is compared to isoform c.
- Source sequence(s)
-
AC009950
- Consensus CDS
-
CCDS2476.1
- UniProtKB/TrEMBL
-
G5E9C0
- Related
- ENSP00000258382.5, ENST00000258382.10
- Conserved Domains (3) summary
-
- pfam01342
Location:463 → 534
- SAND; SAND domain
- pfam03172
Location:8 → 106
- HSR; HSR domain
- pfam05110
Location:171 → 380
- AF-4; AF-4 proto-oncoprotein
-
NM_080424.4 → NP_536349.3 sp110 nuclear body protein isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (c) represents the longest transcript and it encodes the longest protein (isoform c).
- Source sequence(s)
-
AC009950, AK026488, AL832300, DB474530, L22343
- Consensus CDS
-
CCDS2475.1
- Related
- ENSP00000258381.6, ENST00000258381.11
- Conserved Domains (4) summary
-
- cd05501
Location:601 → 701
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:536 → 577
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:459 → 532
- SAND; SAND domain
- pfam03172
Location:8 → 106
- HSR; HSR domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
230165186..230225636 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024452850.2 → XP_024308618.1 sp110 nuclear body protein isoform X5
- UniProtKB/TrEMBL
-
A0A8V8TMX7
- Conserved Domains (4) summary
-
- cd15626
Location:492 → 533
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:415 → 488
- SAND; SAND domain
- pfam03172
Location:14 → 112
- HSR; HSR domain
- cl02556
Location:524 → 586
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
XM_011511090.4 → XP_011509392.1 sp110 nuclear body protein isoform X2
- Conserved Domains (4) summary
-
- cd15626
Location:492 → 533
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:415 → 488
- SAND; SAND domain
- pfam03172
Location:17 → 110
- Sp100; Sp100 domain
- cl02556
Location:524 → 683
- Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
XM_011511091.4 → XP_011509393.1 sp110 nuclear body protein isoform X3
- Conserved Domains (4) summary
-
- cd15626
Location:542 → 583
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:465 → 538
- SAND; SAND domain
- pfam03172
Location:17 → 110
- Sp100; Sp100 domain
- cl02556
Location:574 → 660
- Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
XM_017003968.3 → XP_016859457.1 sp110 nuclear body protein isoform X1
- Conserved Domains (4) summary
-
- cd15626
Location:542 → 583
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:465 → 538
- SAND; SAND domain
- pfam03172
Location:14 → 112
- HSR; HSR domain
- cl02556
Location:574 → 733
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
XM_011511092.4 → XP_011509394.1 sp110 nuclear body protein isoform X7
- Conserved Domains (3) summary
-
- cd15626
Location:333 → 374
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:256 → 329
- SAND; SAND domain
- cl02556
Location:365 → 524
- Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
XM_047444121.1 → XP_047300077.1 sp110 nuclear body protein isoform X6
- UniProtKB/TrEMBL
- A0A8V8TMX7, A0A8V8TN67
- Related
- ENSP00000513564.1, ENST00000698100.1
-
XM_047444120.1 → XP_047300076.1 sp110 nuclear body protein isoform X4
- UniProtKB/TrEMBL
-
A0A8V8TLE9
-
XM_017003969.2 → XP_016859458.1 sp110 nuclear body protein isoform X8
- UniProtKB/TrEMBL
-
A0A8V8TMX7
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
230648299..230708761 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054341727.1 → XP_054197702.1 sp110 nuclear body protein isoform X5
- UniProtKB/TrEMBL
-
A0A8V8TMX7
-
XM_054341724.1 → XP_054197699.1 sp110 nuclear body protein isoform X2
-
XM_054341725.1 → XP_054197700.1 sp110 nuclear body protein isoform X3
-
XM_054341723.1 → XP_054197698.1 sp110 nuclear body protein isoform X1
-
XM_054341729.1 → XP_054197704.1 sp110 nuclear body protein isoform X7
-
XM_054341728.1 → XP_054197703.1 sp110 nuclear body protein isoform X6
- UniProtKB/TrEMBL
-
A0A8V8TMX7
-
XM_054341726.1 → XP_054197701.1 sp110 nuclear body protein isoform X4
- UniProtKB/TrEMBL
-
A0A8V8TLE9
-
XM_054341730.1 → XP_054197705.1 sp110 nuclear body protein isoform X8
- UniProtKB/TrEMBL
-
A0A8V8TMX7