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    intE putative integrase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948034, updated on 3-Dec-2024

    Summary

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    Official Symbol
    intE
    Official Full Name
    putative integrase
    Primary source
    ECOCYC:EG12370
    Locus tag
    b1140
    See related
    ASAP:ABE-0003836
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1126; int(Lambda); ycfI
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    Genomic context

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    Sequence:
    NC_000913.3 (1199679..1200806, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YmfE Neighboring gene cell death peptidase Lit Neighboring gene putative excisionase Neighboring gene putative protein YmfH Neighboring gene uncharacterized protein YmfI Neighboring gene uncharacterized protein YmfJ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of sperm-specific proteins that interact with A-kinase anchoring proteins in a manner similar to the type II regulatory subunit of PKA. Carr DW, et al. J Biol Chem, 2001 May 18. PMID 11278869
    2. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
    3. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables integrase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein heterodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables site-specific recombinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromosome segregation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in establishment of integrated proviral latency IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral genome integration into host DNA IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative integrase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1199679..1200806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415658.1 putative integrase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415658.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN3HBV5
      Conserved Domains (2) summary
      cd00800
      Location:197 → 371
      INT_Lambda_C; C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase
      pfam09003
      Location:3 → 73
      Arm-DNA-bind_1; Bacteriophage lambda integrase, Arm DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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