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    pinR putative site-specific recombinase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948973, updated on 3-Dec-2024

    Summary

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    Official Symbol
    pinR
    Official Full Name
    putative site-specific recombinase
    Primary source
    ECOCYC:G6697
    Locus tag
    b1374
    See related
    ASAP:ABE-0004599
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1369; ynaD
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    Genomic context

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    Sequence:
    NC_000913.3 (1433084..1433674, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative prophage side tail fiber protein StfR Neighboring gene putative tail fiber assembly protein TfaR Neighboring gene uncharacterized protein YnaE Neighboring gene protein YnaM

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    2. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA strand exchange activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA strand exchange activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative site-specific recombinase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1433084..1433674 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415892.1 putative site-specific recombinase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415892.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8H9XMJ8
      Conserved Domains (1) summary
      COG1961
      Location:3 → 191
      PinE; Site-specific DNA recombinase related to the DNA invertase Pin [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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