U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ytfQ galactofuranose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948746, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ytfQ
    Official Full Name
    galactofuranose ABC transporter periplasmic binding protein
    Primary source
    ECOCYC:EG12517
    Locus tag
    b4227
    See related
    ASAP:ABE-0013829
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4223
    Summary
    Putative YjfF-YtfTRQ ABC transport system. [More information is available at EcoGene: EG12517]. YtfQ is a periplasmic binding component of a predicted sugar ABC transporter. [More information is available at EcoCyc: EG12517].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (4449962..4450918)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system Neighboring gene endoribonuclease toxin ChpB Neighboring gene inorganic pyrophosphatase Neighboring gene galactofuranose ABC transporter putative ATP binding subunit Neighboring gene galactofuranose ABC transporter putative membrane subunit YtfT Neighboring gene galactofuranose ABC transporter putative membrane subunit YjtF

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteome analysis to assess physiological changes in Escherichia coli grown under glucose-limited fed-batch conditions. Raman B, et al. Biotechnol Bioeng, 2005 Nov 5. PMID 16180237
    2. The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner. Vertommen D, et al. Mol Microbiol, 2008 Jan. PMID 18036138, Free PMC Article
    3. Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein. Horler RS, et al. J Biol Chem, 2009 Nov 6. PMID 19744923, Free PMC Article
    4. Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains. Han MJ, et al. J Biosci Bioeng, 2014 Apr. PMID 24140104
    5. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables galactose binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables monosaccharide binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in galactose transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within galactose transmembrane transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in hexose import across plasma membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    galactofuranose ABC transporter periplasmic binding protein
    NP_418648.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4449962..4450918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418648.1 galactofuranose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418648.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A793CAV9
      Conserved Domains (1) summary
      cd06309
      Location:25 → 312
      PBP1_galactofuranose_YtfQ-like; periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.