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    rpsE 30S ribosomal subunit protein S5 [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947795, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rpsE
    Official Full Name
    30S ribosomal subunit protein S5
    Primary source
    ECOCYC:EG10904
    Locus tag
    b3303
    See related
    ASAP:ABE-0010823
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3290; eps; spc; spcA
    Summary
    The S5 protein is a component of the 30S subunit of the ribosome. [More information is available at EcoCyc: EG10904].
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    Genomic context

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    Sequence:
    NC_000913.3 (3444726..3445229, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit protein L15 Neighboring gene 50S ribosomal subunit protein L30 Neighboring gene 50S ribosomal subunit protein L18 Neighboring gene 50S ribosomal subunit protein L6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence. Yang Z, et al. Protein Cell, 2014 May. PMID 24671761, Free PMC Article
    2. Sucrose-dependent spectinomycin-resistant mutants of Escherichia coli. Miyoshi Y, et al. J Bacteriol, 1976 Jan. PMID 128550, Free PMC Article
    3. Genetic position and amino acid replacements of several mutations in ribosomal protein S5 from Escherichia coli. Piepersberg W, et al. Mol Gen Genet, 1975 Dec 30. PMID 129673
    4. Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity. Piepersberg W, et al. Mol Gen Genet, 1975 Sep 29. PMID 1105158
    5. Localization of the amino-acid exchange in protein S5 from an Escherichia coli mutant resistant to spectinomycin. DeWilde M, et al. Mol Gen Genet, 1973 Dec 31. PMID 4273819

    See all (49) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The role of S5 is in coordinating the 5' end maturation and the 3' domain assembly.
      Title: Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence.
    2. rimJ as a high-copy suppressor of the cold-sensitive phenotype associated with the S5(G28D) mutation.
      Title: Suppression of a cold-sensitive mutation in ribosomal protein S5 reveals a role for RimJ in ribosome biogenesis.
    3. N-terminus verified by Edman degradation on mature peptide
      Title: The primary structure of protein S5 from the small subunit of the Escherichia coli ribosome.
    4. the importance of rpsE in ribosome function and cell physiology
      Title: A novel single amino acid change in small subunit ribosomal protein S5 has profound effects on translational fidelity.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within maintenance of translational fidelity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to antibiotic IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosomal small subunit assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    30S ribosomal subunit protein S5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3444726..3445229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417762.1 30S ribosomal subunit protein S5 [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417762.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9ARY7
      Conserved Domains (1) summary
      PRK00550
      Location:1 → 166
      rpsE; 30S ribosomal protein S5; Validated
    Nucleotide Protein
    Heading Accession and Version

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