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    yacL PF06062 family protein YacL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944809, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yacL
    Official Full Name
    PF06062 family protein YacL
    Primary source
    ECOCYC:EG12605
    Locus tag
    b0119
    See related
    ASAP:ABE-0000414
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0118
    Summary
    A mutation has been constructed . [More information is available at EcoCyc: EG12605].
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    Genomic context

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    Sequence:
    NC_000913.3 (134388..134750)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF3300 domain-containing protein YacH Neighboring gene AcnB Neighboring gene S-adenosylmethionine decarboxylase proenzyme Neighboring gene spermidine synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Spermidine biosynthesis in Escherichia coli: promoter and termination regions of the speED operon. Xie QW, et al. J Bacteriol, 1989 Aug. PMID 2666401, Free PMC Article
    2. Reliable identification of protein-protein interactions by crosslinking mass spectrometry. Lenz S, et al. Nat Commun, 2021 Jun 11. PMID 34117231, Free PMC Article
    3. Tools for characterization of Escherichia coli genes of unknown function. Merlin C, et al. J Bacteriol, 2002 Aug. PMID 12142427, Free PMC Article
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PF06062 family protein YacL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      134388..134750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414661.2 PF06062 family protein YacL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414661.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7H4YKU9
      Conserved Domains (1) summary
      COG3112
      Location:1 → 120
      YacL; Uncharacterized protein YacL, UPF0231 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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