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    ycaQ interstrand DNA crosslink repair glycosylase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945524, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycaQ
    Official Full Name
    interstrand DNA crosslink repair glycosylase
    Primary source
    ECOCYC:G6471
    Locus tag
    b0916
    See related
    ASAP:ABE-0003117
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    alkZ; ECK0907
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    Genomic context

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    Sequence:
    NC_000913.3 (969389..970621)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene metallo-beta-lactamase superfamily inner membrane protein YcaI Neighboring gene ATP-binding lipopolysaccharide transport protein Neighboring gene tetraacyldisaccharide 4'-kinase Neighboring gene PF03966 family protein YcaR Neighboring gene 3-deoxy-manno-octulosonate cytidylyltransferase Neighboring gene putative phosphotransferase YcbJ Neighboring gene envelope biogenesis factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli YcaQ is a DNA glycosylase that unhooks DNA interstrand crosslinks. Bradley NP, et al. Nucleic Acids Res, 2020 Jul 27. PMID 32409837, Free PMC Article
    2. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Escherichia coli YcaQ is a DNA glycosylase that unhooks DNA interstrand crosslinks.
      Title: Escherichia coli YcaQ is a DNA glycosylase that unhooks DNA interstrand crosslinks.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA N-glycosylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA N-glycosylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within interstrand cross-link repair EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in interstrand cross-link repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within interstrand cross-link repair IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interstrand DNA crosslink repair glycosylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      969389..970621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415436.1 interstrand DNA crosslink repair glycosylase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415436.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376X3H8
      Conserved Domains (1) summary
      COG3214
      Location:1 → 407
      YcaQ; Uncharacterized conserved protein YcaQ, contains winged helix DNA-binding domain [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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