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    cmoM tRNA cmo(5)U34 methyltransferase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945547, updated on 3-Dec-2024

    Summary

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    Official Symbol
    cmoM
    Official Full Name
    tRNA cmo(5)U34 methyltransferase
    Primary source
    ECOCYC:EG12167
    Locus tag
    b0921
    See related
    ASAP:ABE-0003131
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0912; smtA; ycbD
    Summary
    SmtA shows sequence similarity to SAM-dependent methyltransferases . [More information is available at EcoCyc: EG12167].
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    Genomic context

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    Sequence:
    NC_000913.3 (973537..974322)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF03966 family protein YcaR Neighboring gene 3-deoxy-manno-octulosonate cytidylyltransferase Neighboring gene putative phosphotransferase YcbJ Neighboring gene envelope biogenesis factor Neighboring gene chromosome partitioning protein MukF Neighboring gene chromosome partitioning protein MukE Neighboring gene chromosome partitioning protein MukB Neighboring gene L,D-transpeptidase LdtD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons. Sakai Y, et al. Nucleic Acids Res, 2016 Jan 29. PMID 26681692, Free PMC Article
    2. Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli. Yamanaka K, et al. Mol Gen Genet, 1996 Feb 25. PMID 8602138
    3. Characterization of the smtA gene encoding an S-adenosylmethionine-dependent methyltransferase of Escherichia coli. Yamanaka K, et al. FEMS Microbiol Lett, 1995 Nov 1. PMID 8566713
    4. New killing system controlled by two genes located immediately upstream of the mukB gene in Escherichia coli. Feng J, et al. Mol Gen Genet, 1994 Apr. PMID 7513784
    5. RecA-dependent mutants in Escherichia coli reveal strategies to avoid chromosomal fragmentation. Kouzminova EA, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15531636, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA (5-carboxymethoxyuridine(34)-5-O)-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables tRNA (5-carboxymethoxyuridine(34)-5-O)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within tRNA methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within tRNA wobble uridine modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA cmo(5)U34 methyltransferase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      973537..974322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415441.1 tRNA cmo(5)U34 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415441.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9ANN0
      Conserved Domains (1) summary
      PRK11036
      Location:1 → 255
      PRK11036; tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM
    Nucleotide Protein
    Heading Accession and Version

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