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    ydiK putative transporter YdiK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946183, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydiK
    Official Full Name
    putative transporter YdiK
    Primary source
    ECOCYC:G6914
    Locus tag
    b1688
    See related
    ASAP:ABE-0005637
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1685
    Summary
    Probable false positive lipoprotein prediction, Cys not conserved, 9 CM TMs predicted. [More information is available at EcoGene: EG13970]. YdiK is an inner membrane protein with eight predicted transmembrane domains. [More information is available at EcoCyc: G6914].
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    Genomic context

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    Sequence:
    NC_000913.3 (1769074..1770186)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YdiH Neighboring gene 1,4-dihydroxy-2-naphthoyl-CoA hydrolase Neighboring gene putative FAD-linked oxidoreductase YdiJ Neighboring gene ncRNA Neighboring gene DUF1870 domain-containing protein YdiL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Purine regulon of gamma-proteobacteria: a detailed description]. Ravcheev DA, et al. Genetika, 2002 Sep. PMID 12391881
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transporter YdiK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1769074..1770186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416203.1 putative transporter YdiK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416203.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418GEU3
      Conserved Domains (1) summary
      PRK10983
      Location:1 → 355
      PRK10983; AI-2E family transporter YdiK
    Nucleotide Protein
    Heading Accession and Version

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