U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ydeO DNA-binding transcriptional dual regulator YdeO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945922, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydeO
    Official Full Name
    DNA-binding transcriptional dual regulator YdeO
    Primary source
    ECOCYC:G6789
    Locus tag
    b1499
    See related
    ASAP:ABE-0004992
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1493
    Summary
    EvgAS regulon. [More information is available at EcoGene: EG13797]. YdeO activates genes involved in the cellular response to acid resistance . [More information is available at EcoCyc: G6789].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1582926..1583687, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YneP Neighboring gene putative anaerobic sulfatase maturation enzyme YdeM Neighboring gene putative sulfatase YdeN Neighboring gene two-component system connector SafA Neighboring gene putative oxidoreductase YdeP

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of the YdeO regulon in Escherichia coli. Yamanaka Y, et al. PLoS One, 2014. PMID 25375160, Free PMC Article
    2. Role of the AraC-XylS family regulator YdeO in multi-drug resistance of Escherichia coli. Nishino K, et al. J Antibiot (Tokyo), 2009 May. PMID 19329985
    3. Characterization of enteropathogenic Escherichia coli mutants that fail to disrupt host cell spreading and attachment to substratum. Nadler C, et al. Infect Immun, 2006 Feb. PMID 16428726, Free PMC Article
    4. Characterization of EvgAS-YdeO-GadE branched regulatory circuit governing glutamate-dependent acid resistance in Escherichia coli. Ma Z, et al. J Bacteriol, 2004 Nov. PMID 15489450, Free PMC Article
    5. Molecular mechanism of transcriptional cascade initiated by the EvgS/EvgA system in Escherichia coli K-12. Itou J, et al. Biosci Biotechnol Biochem, 2009 Apr 23. PMID 19352034

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding transcriptional dual regulator YdeO

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1582926..1583687 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416016.1 DNA-binding transcriptional dual regulator YdeO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416016.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N8NFN8
      Conserved Domains (1) summary
      PRK09940
      Location:1 → 253
      PRK09940; transcriptional regulator YdeO; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.