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    ydfK cold shock protein YdfK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947451, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydfK
    Official Full Name
    cold shock protein YdfK
    Primary source
    ECOCYC:G6818
    Locus tag
    b1544
    See related
    ASAP:ABE-0005161
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1537
    Summary
    YdfK differs from YnaE by one residue. [More information is available at EcoGene: EG13823].
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    Genomic context

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    Sequence:
    NC_000913.3 (1633072..1633305)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YdfJ Neighboring gene protein YnfT Neighboring gene putative recombinase PinQ Neighboring gene putative tail fiber assembly protein TfaQ Neighboring gene putative prophage side tail fiber protein StfQ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Twiss E, et al. Mol Microbiol, 2005 Sep. PMID 16135227
    2. Changes in Escherichia coli transcriptome during acclimatization at low temperature. Polissi A, et al. Res Microbiol, 2003 Oct. PMID 14527658
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cold shock protein YdfK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1633072..1633305
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416062.2 cold shock protein YdfK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416062.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6QGD5
    Nucleotide Protein
    Heading Accession and Version

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