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    yphF putative ABC transporter periplasmic binding protein YphF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947020, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yphF
    Official Full Name
    putative ABC transporter periplasmic binding protein YphF
    Primary source
    ECOCYC:G7342
    Locus tag
    b2548
    See related
    ASAP:ABE-0008378
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2545
    Summary
    Predicted yphFEDCB operon. [More information is available at EcoGene: EG13467]. YphF is a periplasmic binding component of a predicted ATP-dependent sugar transporter. [More information is available at EcoCyc: G7342].
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    Genomic context

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    Sequence:
    NC_000913.3 (2678384..2679367, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter membrane subunit YphD Neighboring gene putative ABC transporter ATP-binding protein YphE Neighboring gene DUF5107 domain-containing protein YphG Neighboring gene putative DNA-binding transcriptional regulator, NAGC-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    2. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Link AJ, et al. Electrophoresis, 1997 Aug. PMID 9298646
    3. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative ABC transporter periplasmic binding protein YphF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2678384..2679367 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417043.1 putative ABC transporter periplasmic binding protein YphF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417043.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9X4W0
      Conserved Domains (1) summary
      cl10011
      Location:32 → 319
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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