U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    hofP DNA utilization protein HofP [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947900, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    hofP
    Official Full Name
    DNA utilization protein HofP
    Primary source
    ECOCYC:G7736
    Locus tag
    b3392
    See related
    ASAP:ABE-0011073
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3379; yrfA
    Summary
    The yrfA gene product is required for utilization of DNA as the sole source of carbon and energy; yrfA is homologous to genes involved in natural competence and genetic transformation in other bacteria . [More information is available at EcoCyc: G7736].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3520615..3521019, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-dehydroquinate synthase Neighboring gene shikimate kinase 1 Neighboring gene DNA utilization protein HofQ Neighboring gene DNA utilization protein HofO Neighboring gene DNA utilization protein HofN Neighboring gene DNA utilization protein HofM

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PpdD type IV pilin of Escherichia coli K-12 can Be assembled into pili in Pseudomonas aeruginosa. Sauvonnet N, et al. J Bacteriol, 2000 Feb. PMID 10633126, Free PMC Article
    2. DNA as a nutrient: novel role for bacterial competence gene homologs. Finkel SE, et al. J Bacteriol, 2001 Nov. PMID 11591672, Free PMC Article
    3. Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient. Palchevskiy V, et al. J Bacteriol, 2006 Jun. PMID 16707682, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within carbon utilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA utilization protein HofP

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3520615..3521019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417851.4 DNA utilization protein HofP [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417851.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A444RFS3
      Conserved Domains (1) summary
      pfam10748
      Location:3 → 134
      DUF2531; Protein of unknown function (DUF2531)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.