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    yhgH DNA utilization protein YhgH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947915, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yhgH
    Official Full Name
    DNA utilization protein YhgH
    Primary source
    ECOCYC:G7747
    Locus tag
    b3413
    See related
    ASAP:ABE-0011139
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3400; gntX
    Summary
    gntX does not have a role in gluconate metabolism (Personal communication, T.Conway, personal communication, 2000). gntX is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006). [More information is available at EcoGene: EG12934]. The yhgH gene product is required for utilization of DNA as the sole source of carbon and energy; yhgH is homologous to genes involved in natural competence and genetic transformation in other bacteria . [More information is available at EcoCyc: G7747].
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    Genomic context

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    Sequence:
    NC_000913.3 (3544882..3545565)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene recombination-promoting nuclease RpnA Neighboring gene pimeloyl-acyl carrier protein methyl ester esterase Neighboring gene iron-sulfur cluster carrier protein NfuA Neighboring gene high-affinity gluconate transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria. Cameron AD, et al. Nucleic Acids Res, 2006. PMID 17068078, Free PMC Article
    2. DNA as a nutrient: novel role for bacterial competence gene homologs. Finkel SE, et al. J Bacteriol, 2001 Nov. PMID 11591672, Free PMC Article
    3. The gluconate high affinity transport of GntI in Escherichia coli involves a multicomponent complex system. Porco A, et al. J Basic Microbiol, 1998. PMID 9871335
    4. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    5. Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient. Palchevskiy V, et al. J Bacteriol, 2006 Jun. PMID 16707682, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DNA utilization protein YhgH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3544882..3545565
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417872.2 DNA utilization protein YhgH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417872.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AP16
      Conserved Domains (1) summary
      PRK11595
      Location:1 → 227
      PRK11595; DNA utilization protein GntX; Provisional
    Nucleotide Protein
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