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    yagH putative xylosidase/arabinosidase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944949, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yagH
    Official Full Name
    putative xylosidase/arabinosidase
    Primary source
    ECOCYC:G6143
    Locus tag
    b0271
    See related
    ASAP:ABE-0000931
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0272
    Summary
    yagGH is predicted to be an operon involved in uptake and catabolism of an unknown sugar substrate. [More information is available at EcoGene: EG13347]. YagH is a putative beta-xylosidase . [More information is available at EcoCyc: G6143].
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    Genomic context

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    Sequence:
    NC_000913.3 (286789..288399)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene D-xylonate dehydratase Neighboring gene putative D-xylonate transporter YagG Neighboring gene DNA-binding transcriptional repressor XynR Neighboring gene ornithine carbamoyltransferase ArgF Neighboring gene putative translational regulatory protein ArgL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis. Garcia-Vallvé S, et al. Mol Biol Evol, 1999 Sep. PMID 10486968
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xylan 1,4-beta-xylosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative xylosidase/arabinosidase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      286789..288399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414805.1 putative xylosidase/arabinosidase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414805.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P77713
      Conserved Domains (1) summary
      COG3507
      Location:1 → 536
      XynB2; Beta-xylosidase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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