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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001160167.2 → NP_001153639.1 proline-rich protein 5-like isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Both variants 1 and 2 encode the same isoform (a).
- Source sequence(s)
-
AC009656, AK055042, BX640959, DA344861, DA449593
- Consensus CDS
-
CCDS31463.1
- UniProtKB/Swiss-Prot
- A4QN22, E9PKY1, Q6MZQ0, Q96H46, Q9H7V4
- UniProtKB/TrEMBL
-
B3KNU3
- Related
- ENSP00000435050.1, ENST00000530639.6
- Conserved Domains (1) summary
-
- pfam08539
Location:49 → 168
- HbrB; HbrB-like
-
NM_001160168.2 → NP_001153640.1 proline-rich protein 5-like isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an alternate AUG and a shorter isoform (b) compared to isoform a.
- Source sequence(s)
-
AC009656, AK024275, BX640959, DA458327
- UniProtKB/Swiss-Prot
-
Q6MZQ0
- Related
-
ENST00000389693.3
- Conserved Domains (1) summary
-
- pfam08539
Location:5 → 100
- HbrB; HbrB-like
-
NM_001160169.1 → NP_001153641.1 proline-rich protein 5-like isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks an exon in the 3' coding region, which results in a frameshift and an early stop codon, compared to variant 1. The encoded isoform (c) has a shorter and distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AC009656, BC008922, BX640959, DA344861, DR001466
- Consensus CDS
-
CCDS53617.1
- UniProtKB/Swiss-Prot
-
Q6MZQ0
- Related
- ENSP00000435241.1, ENST00000527487.1
- Conserved Domains (1) summary
-
- pfam08539
Location:49 → 168
- HbrB; HbrB-like
-
NM_024841.5 → NP_079117.3 proline-rich protein 5-like isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (a).
- Source sequence(s)
-
AC009656, BX640959, DA344861, DA458327
- Consensus CDS
-
CCDS31463.1
- UniProtKB/Swiss-Prot
- A4QN22, E9PKY1, Q6MZQ0, Q96H46, Q9H7V4
- UniProtKB/TrEMBL
-
B3KNU3
- Related
- ENSP00000368144.3, ENST00000378867.7
- Conserved Domains (1) summary
-
- pfam08539
Location:49 → 168
- HbrB; HbrB-like
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
36296288..36465204
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
36436630..36607651
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)