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    LINC00920 long intergenic non-protein coding RNA 920 [ Homo sapiens (human) ]

    Gene ID: 100505865, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00920provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 920provided by HGNC
    Primary source
    HGNC:HGNC:48611
    See related
    AllianceGenome:HGNC:48611
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CALIC; LINRIS
    Expression
    Broad expression in gall bladder (RPKM 1.9), spleen (RPKM 1.9) and 23 other tissues See more
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    Genomic context

    See LINC00920 in Genome Data Viewer
    Location:
    16q21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (66408524..66410901)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (72202727..72205105)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (66442427..66444804)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:66339117-66339617 Neighboring gene RNA, 5S ribosomal pseudogene 428 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:66358401-66358938 Neighboring gene uncharacterized LOC105371318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:66400487-66401036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:66401847-66402553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:66404897-66405398 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:66406597-66407126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:66407769-66408342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:66413378-66414004 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:66417102-66417626 Neighboring gene cadherin 5 Neighboring gene Sharpr-MPRA regulatory region 12004 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:66462026-66462626 Neighboring gene brain expressed associated with NEDD4 1 Neighboring gene nuclear envelope phosphatase-regulatory subunit 1-like Neighboring gene uncharacterized LOC124903698 Neighboring gene BEAN1 antisense RNA 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    General gene information

    Markers

    Other Names

    • CTD-2258A20.4
    • Long Intergenic Noncoding RNA for IGF2BP2 Stability
    • cancer metastasis-associated long intergenic non-coding RNA
    • cancer metastasisaassociated long intergenic nonacoding RNA

    Clone Names

    • FLJ32121

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046242.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW015153, DA813001

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      66408524..66410901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      72202727..72205105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)