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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_052989.2 RefSeqGene
- Range
-
12903..104714
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001270942.1 → NP_001257871.1 Krueppel-like factor 7 isoform 2
See identical proteins and their annotated locations for NP_001257871.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate splice site in the coding region that results in a frameshift, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC008062, BC012919, DA800775
- Consensus CDS
-
CCDS59439.1
- UniProtKB/Swiss-Prot
-
O75840
- Related
- ENSP00000398572.1, ENST00000423015.5
-
NM_001270943.2 → NP_001257872.1 Krueppel-like factor 7 isoform 3
See identical proteins and their annotated locations for NP_001257872.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The resulting protein (isoform 3) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC007879, AC008062
- Consensus CDS
-
CCDS59440.1
- UniProtKB/TrEMBL
-
Q4ZG79
- Related
- ENSP00000387510.1, ENST00000421199.5
- Conserved Domains (3) summary
-
- COG5048
Location:179 → 251
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:191 → 210
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:246 → 268
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001270944.2 → NP_001257873.1 Krueppel-like factor 7 isoform 4
See identical proteins and their annotated locations for NP_001257873.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (4) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC007879, AC008062
- Consensus CDS
-
CCDS59438.1
- UniProtKB/TrEMBL
-
Q4ZG79
- Related
- ENSP00000413590.2, ENST00000435602.2
- Conserved Domains (3) summary
-
- COG5048
Location:184 → 256
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:196 → 215
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:251 → 273
- zf-C2H2; Zinc finger, C2H2 type
-
NM_003709.4 → NP_003700.1 Krueppel-like factor 7 isoform 1
See identical proteins and their annotated locations for NP_003700.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC007879, AC008062
- Consensus CDS
-
CCDS2373.1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
- Related
- ENSP00000309570.6, ENST00000309446.11
- Conserved Domains (5) summary
-
- COG5048
Location:212 → 284
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:224 → 243
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:279 → 301
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:265 → 290
- zf-H2C2_2; Zinc-finger double domain
- cd21585
Location:2 → 220
- KLF7_N; N-terminal domain of Kruppel-like factor 7
RNA
-
NR_073108.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains an alternate 5' exon and uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC008062, DA023826
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
207074137..207173851 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047446149.1 → XP_047302105.1 Krueppel-like factor 7 isoform X3
- UniProtKB/TrEMBL
-
Q4ZG79
-
XM_047446146.1 → XP_047302102.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_047446145.1 → XP_047302101.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_047446147.1 → XP_047302103.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_047446144.1 → XP_047302100.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_017005161.2 → XP_016860650.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
- Conserved Domains (5) summary
-
- COG5048
Location:212 → 284
- COG5048; FOG: Zn-finger [General function prediction only]
- sd00017
Location:224 → 243
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:279 → 301
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:265 → 290
- zf-H2C2_2; Zinc-finger double domain
- cd21585
Location:2 → 220
- KLF7_N; N-terminal domain of Kruppel-like factor 7
-
XM_017005164.3 → XP_016860653.1 Krueppel-like factor 7 isoform X5
- UniProtKB/Swiss-Prot
-
O75840
- Related
- ENSP00000515454.1, ENST00000703734.1
-
XM_047446148.1 → XP_047302104.1 Krueppel-like factor 7 isoform X2
- UniProtKB/TrEMBL
-
Q4ZG79
-
XM_011512075.3 → XP_011510377.1 Krueppel-like factor 7 isoform X4
- UniProtKB/TrEMBL
-
A0A994J6Y4
- Conserved Domains (2) summary
-
- sd00017
Location:221 → 243
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:219 → 243
- zf-C2H2; Zinc finger, C2H2 type
-
XM_047446150.1 → XP_047302106.1 Krueppel-like factor 7 isoform X4
- UniProtKB/TrEMBL
-
A0A994J6Y4
RNA
-
XR_923051.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
207556313..207657581 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054344310.1 → XP_054200285.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_054344311.1 → XP_054200286.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_054344313.1 → XP_054200288.1 Krueppel-like factor 7 isoform X3
- UniProtKB/TrEMBL
-
Q4ZG79
-
XM_054344309.1 → XP_054200284.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_054344308.1 → XP_054200283.1 Krueppel-like factor 7 isoform X1
- UniProtKB/Swiss-Prot
- B2RB03, B7Z4F7, C9JF04, E7EWH1, L0R4P2, O75840, Q7Z3H8, Q96E51
- UniProtKB/TrEMBL
-
B3KNE6
-
XM_054344316.1 → XP_054200291.1 Krueppel-like factor 7 isoform X5
-
XM_054344312.1 → XP_054200287.1 Krueppel-like factor 7 isoform X2
- UniProtKB/TrEMBL
-
Q4ZG79
-
XM_054344314.1 → XP_054200289.1 Krueppel-like factor 7 isoform X4
- UniProtKB/TrEMBL
-
A0A994J6Y4
-
XM_054344315.1 → XP_054200290.1 Krueppel-like factor 7 isoform X4
- UniProtKB/TrEMBL
-
A0A994J6Y4
RNA
-
XR_008486574.1 RNA Sequence
-
XR_008486573.1 RNA Sequence