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    c-cup calcutta cup [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33360, updated on 9-Dec-2024

    Summary

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    Official Symbol
    c-cupprovided by FlyBase
    Official Full Name
    calcutta cupprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031367
    Locus tag
    Dmel_CG15623
    See related
    AllianceGenome:FB:FBgn0031367
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG15623; Dmel\CG15623
    Summary
    Predicted to be active in endomembrane system and membrane. Is expressed in adult head; elongation stage spermatid; and primary spermatocyte. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See c-cup in Genome Data Viewer
    Location:
    22B3-22B3; 2-3 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (1831627..1832565, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (1831627..1832565, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene mir-2280 stem loop Neighboring gene long non-coding RNA:CR44073 Neighboring gene long non-coding RNA:CR44074 Neighboring gene weary

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene deletion screen for cardiomyopathy in adult Drosophila identifies a new notch ligand. Kim IM, et al. Circ Res, 2010 Apr 16. PMID 20203305, Free PMC Article
    2. Analysis of the Drosophila melanogaster testes transcriptome reveals coordinate regulation of paralogous genes. Mikhaylova LM, et al. Genetics, 2008 May. PMID 18493055, Free PMC Article
    3. Determination of gene expression patterns using in situ hybridization to Drosophila testes. Morris CA, et al. Nat Protoc, 2009. PMID 20010932
    4. Tissue, cell type and stage-specific ectopic gene expression and RNAi induction in the Drosophila testis. White-Cooper H. Spermatogenesis, 2012 Jan 1. PMID 22553486, Free PMC Article
    5. Post-meiotic transcription in Drosophila testes. Barreau C, et al. Development, 2008 Jun. PMID 18434411

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    • mir-2280-RA; Dmel\mir-2280-RA; CR42982-RA; Dmel\CR42982-RA
    • mir-2280-RB; Dmel\mir-2280-RB; CR42982-RB; Dmel\CR42982-RB

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    calcutta cup
    Names
    CG15623-PA
    c-cup-PA
    calcutta-cup

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      1831627..1832565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134779.3 → NP_608623.2  calcutta cup [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608623.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4V6G7, Q9VQ46
      Related
      FBpp0077562
      Conserved Domains (1) summary
      cl02041
      Location:87 → 115
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VQ46 Q9VQ46

    Gene LinkOut

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