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    CG13609 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42883, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13609provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039170
    Locus tag
    Dmel_CG13609
    See related
    AllianceGenome:FB:FBgn0039170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13609
    Summary
    Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex and transcription regulator complex. Orthologous to human PTOV1 (PTOV1 extended AT-hook containing adaptor protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13609 in Genome Data Viewer
    Location:
    95F3-95F3; 3-84 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24227023..24228538)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20052745..20054260)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene twin Neighboring gene uncharacterized protein Neighboring gene caravaggio Neighboring gene long non-coding RNA:CR45217 Neighboring gene Sp1-like factor for pairing sensitive-silencing Neighboring gene long non-coding RNA:CR44092 Neighboring gene Spase 22/23-subunit Neighboring gene Accessory gland protein 95EF Neighboring gene multiple ankyrin repeats single KH domain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease. Nim HT, et al. Genome Biol, 2021 Dec 15. PMID 34906219, Free PMC Article
    2. Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura. Wagstaff BJ, et al. Mol Biol Evol, 2005 Apr. PMID 15601888
    3. Molecular pathogenesis of peripheral neuropathies: insights from Drosophila models. Bussmann J, et al. Curr Opin Genet Dev, 2017 Jun. PMID 28213160
    4. Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster. Weber AL, et al. PLoS One, 2012. PMID 22496853, Free PMC Article
    5. Identification of genes that promote or inhibit olfactory memory formation in Drosophila. Walkinshaw E, et al. Genetics, 2015 Apr. PMID 25644700, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13609-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      24227023..24228538
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142976.5 → NP_651233.1  uncharacterized protein Dmel_CG13609 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651233.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VCB1
      Related
      FBpp0083945
      Conserved Domains (1) summary
      pfam11232
      Location:45 → 189
      Med25; Mediator complex subunit 25 PTOV activation and synapsin 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VCB1.1 Q9VCB1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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