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    CG42676 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 2768999, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42676provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0261562
    Locus tag
    Dmel_CG42676
    See related
    AllianceGenome:FB:FBgn0261562
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG12022; CG13923; CG32317; Dmel\CG42676
    Old locus tag
    Dmel_CG12022; Dmel_CG13923
    Summary
    Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG42676 in Genome Data Viewer
    Location:
    62B4-62B4; 3-1.0 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (1803107..1806920)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (1803107..1806920)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Cell division cycle 37 Neighboring gene uncharacterized protein Neighboring gene patj Neighboring gene JTBR Neighboring gene antisense RNA:CR45686 Neighboring gene long non-coding RNA:CR45687 Neighboring gene GV1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Domain-specific early and late function of Dpatj in Drosophila photoreceptor cells. Nam SC, et al. Dev Dyn, 2006 Jun. PMID 16518799
    2. The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster. Jehrke L, et al. Sci Rep, 2018 Apr 18. PMID 29670218, Free PMC Article
    3. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
    4. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article
    5. circRNA biogenesis competes with pre-mRNA splicing. Ashwal-Fluss R, et al. Mol Cell, 2014 Oct 2. PMID 25242144

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42676-PC
    CG42676-PD
    CG42676-PE
    CG42676-PF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      1803107..1806920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299976.1 → NP_001286905.1  uncharacterized protein Dmel_CG42676, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286905.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6IDI1, Q9W081

    2. NM_206238.4 → NP_995960.2  uncharacterized protein Dmel_CG42676, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_995960.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6IDI1, Q9W081

    3. NM_001274362.1 → NP_001261291.1  uncharacterized protein Dmel_CG42676, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261291.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PGW2

    4. NM_001202091.2 → NP_001189020.1  uncharacterized protein Dmel_CG42676, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001189020.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MSJ7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9MSJ7 M9MSJ7
    M9PGW2 M9PGW2
    Q961L1 Q961L1
    Q9W081 Q9W081

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