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    Y48A6C.4 Pre-rRNA-processing protein Ipi1 N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 190016, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Y48A6C.4
    Official Full Name
    Pre-rRNA-processing protein Ipi1 N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00012977
    Locus tag
    CELE_Y48A6C.4
    See related
    AllianceGenome:WB:WBGene00012977
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See Y48A6C.4 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (11119803..11126902)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene C2H2-type domain-containing protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box domain-containing protein;FTH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of MLL1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in intracellular organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Pre-rRNA-processing protein Ipi1 N-terminal domain-containing protein
    NP_499433.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      11119803..11126902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067032.4 → NP_499433.2  Pre-rRNA-processing protein Ipi1 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499433.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWK5
      Conserved Domains (1) summary
      pfam12333
      Location:137 → 198
      Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
    Nucleotide Protein
    Heading Accession and Version

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