U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm7827 predicted gene 7827 [ Mus musculus (house mouse) ]

    Gene ID: 665858, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm7827provided by MGI
    Official Full Name
    predicted gene 7827provided by MGI
    Primary source
    MGI:MGI:3646513
    See related
    AllianceGenome:MGI:3646513
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG665858
    Expression
    Biased expression in testis adult (RPKM 11.4), CNS E18 (RPKM 0.7) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm7827 in Genome Data Viewer
    Location:
    8 B3.3; 8 34.43 cM
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71542508..71624100)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71091701..71171456)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 709 pseudogene Neighboring gene predicted gene, 17576 Neighboring gene vomeronasal 2, receptor, pseudogene 90 Neighboring gene predicted gene 3643 Neighboring gene STARR-seq mESC enhancer starr_21808 Neighboring gene STARR-positive B cell enhancer mm9_chr8:73660786-73661086 Neighboring gene predicted gene, 38415 Neighboring gene STARR-positive B cell enhancer ABC_E8243 Neighboring gene predicted gene, 29701 Neighboring gene adenine phosphoribosyl transferase, pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC665858

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001324526.1 → NP_001311455.1  uncharacterized protein LOC665858

      Status: VALIDATED

      Source sequence(s)
      AC161410, AK133183, BB614445, BQ552747

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      71542508..71624100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036154237.1 → XP_036010130.1  uncharacterized protein LOC665858 isoform X1

      Conserved Domains (3) summary
      pfam05109
      Location:480 → 585
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:204 → 232
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:206 → 297
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_017312935.2 → XP_017168424.1  uncharacterized protein LOC665858 isoform X4

      Conserved Domains (3) summary
      pfam05109
      Location:308 → 413
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:32 → 60
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:34 → 125
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_017312933.2 → XP_017168422.1  uncharacterized protein LOC665858 isoform X2

      Conserved Domains (3) summary
      pfam05109
      Location:431 → 536
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:155 → 183
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:157 → 248
      Ank_2; Ankyrin repeats (3 copies)

    4. XM_036154238.1 → XP_036010131.1  uncharacterized protein LOC665858 isoform X4

      Conserved Domains (3) summary
      pfam05109
      Location:308 → 413
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:32 → 60
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:34 → 125
      Ank_2; Ankyrin repeats (3 copies)

    5. XM_017312936.2 → XP_017168425.1  uncharacterized protein LOC665858 isoform X4

      Conserved Domains (3) summary
      pfam05109
      Location:308 → 413
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:32 → 60
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:34 → 125
      Ank_2; Ankyrin repeats (3 copies)

    6. XM_017312934.2 → XP_017168423.1  uncharacterized protein LOC665858 isoform X3

      Conserved Domains (3) summary
      pfam05109
      Location:363 → 468
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      sd00045
      Location:84 → 115
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:89 → 180
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials