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    SNR9 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164974, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR9
    Primary source
    SGD:S000007292
    Locus tag
    YNCO0014C
    See related
    AllianceGenome:SGD:S000007292
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables RNA binding activity. Predicted to be involved in RNA processing. Located in nucleolus. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR9 in Genome Data Viewer
    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (407948..408134, complement)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene casein kinase 2 regulatory subunit CKB2 Neighboring gene hydroxyacylglutathione hydrolase GLO4 Neighboring gene ubiquitin-binding protein CUE5 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001147.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Yeast contains small nuclear RNAs encoded by single copy genes. Wise JA, et al. Cell, 1983 Dec. PMID 6197183
    2. A diverse set of nuclear RNAs transfer between nuclei of yeast heterokaryons. Olson BL, et al. Yeast, 2003 Jul 30. PMID 12868058
    3. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. Tollervey D. EMBO J, 1987 Dec 20. PMID 3327689, Free PMC Article
    4. The complete chemical structure of Saccharomyces cerevisiae rRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9. Taoka M, et al. Nucleic Acids Res, 2016 Oct 14. PMID 27325748, Free PMC Article
    5. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U2340 and U2345

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA pseudouridylation guide activity NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      407948..408134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132258.1 RNA Sequence

      Status: REVIEWED

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