U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Serpina3k serine (or cysteine) peptidase inhibitor, clade A, member 3K [ Mus musculus (house mouse) ]

    Gene ID: 20714, updated on 9-Dec-2024

    Summary

    Official Symbol
    Serpina3kprovided by MGI
    Official Full Name
    serine (or cysteine) peptidase inhibitor, clade A, member 3Kprovided by MGI
    Primary source
    MGI:MGI:98377
    See related
    Ensembl:ENSMUSG00000058207 AllianceGenome:MGI:98377
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RP54; Spi2; MMCM2; Spi-2; MMSpi2; D12Rp54; contrapsin; 1300001I07Rik
    Summary
    Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within response to cytokine and response to peptide hormone. Located in collagen-containing extracellular matrix. Is expressed in axial skeleton; liver; nervous system; and thymus primordium. Human ortholog(s) of this gene implicated in chronic obstructive pulmonary disease; cystic fibrosis; and vasculitis. Orthologous to human SERPINA3 (serpin family A member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward liver adult (RPKM 1557.0) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Serpina3k in Genome Data Viewer
    Location:
    12 E; 12 53.99 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (104304745..104311998)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (104338486..104345739)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene serine (or cysteine) peptidase inhibitor, clade A, member 3I Neighboring gene microRNA 12183 Neighboring gene serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J Neighboring gene serine (or cysteine) peptidase inhibitor, clade A, member 3L, pseudogene Neighboring gene STARR-seq mESC enhancer starr_33135 Neighboring gene STARR-seq mESC enhancer starr_33136 Neighboring gene serine (or cysteine) peptidase inhibitor, clade A, member 3M

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    serine protease inhibitor A3K
    Names
    alpha-1 antiproteinase
    serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3K
    serine (or cysteine) proteinase inhibitor, clade A, member 3K
    serine protease inhibitor 2
    serpin A3K

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011458.2NP_035588.2  serine protease inhibitor A3K precursor

      Status: PROVISIONAL

      Source sequence(s)
      AK149436
      Consensus CDS
      CCDS36537.1
      UniProtKB/Swiss-Prot
      P07759, Q62257, Q8VCH3, Q91W80, Q91X80
      UniProtKB/TrEMBL
      A0A0R4J0I1
      Related
      ENSMUSP00000042095.4, ENSMUST00000043058.5
      Conserved Domains (1) summary
      smart00093
      Location:57417
      SERPIN; SERine Proteinase INhibitors

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      104304745..104311998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)