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    AA543186 expressed sequence AA543186 [ Mus musculus (house mouse) ]

    Gene ID: 100272219, updated on 22-Oct-2024

    Summary

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    Official Symbol
    AA543186provided by MGI
    Official Full Name
    expressed sequence AA543186provided by MGI
    Primary source
    MGI:MGI:3035233
    See related
    Ensembl:ENSMUSG00000124529 AllianceGenome:MGI:3035233
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in testis adult (RPKM 1.8), CNS E11.5 (RPKM 0.6) and 24 other tissues See more
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    Genomic context

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    See AA543186 in Genome Data Viewer
    Location:
    2 A3; 2 17.17 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25217462..25222583, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25327450..25332571, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 26 Neighboring gene glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand Neighboring gene glutamate receptor, ionotropic, NMDA1 (zeta 1) Neighboring gene STARR-seq mESC enhancer starr_03964 Neighboring gene STARR-seq mESC enhancer starr_03965 Neighboring gene mannosidase, alpha, class 1B, member 1 Neighboring gene dipeptidylpeptidase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027448.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL732309, AL732557
      Related
      ENSMUST00000264230.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      25217462..25222583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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