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    rsrc1.S arginine/serine-rich coiled-coil 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 447603, updated on 27-Dec-2024

    Summary

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    Official Symbol
    rsrc1.S
    Official Full Name
    arginine/serine-rich coiled-coil 1 S homeolog
    Primary source
    Xenbase:XB-GENE-5812627
    Locus tag
    XELAEV_18029756mg
    See related
    EnsemblRapid:ENSXLAG00005003381 AllianceGenome:Xenbase:XB-GENE-5812627
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rsrc1; bm-011; sfrs21; srrp53
    Summary
    Predicted to act upstream of or within alternative mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 70. Orthologous to human RSRC1 (arginine and serine rich coiled-coil 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rsrc1.S in Genome Data Viewer
    Location:
    chromosome: 5S
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (102889843..103052251, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (96122425..96285601, complement)

    Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene retinoic acid receptor responder (tazarotene induced) 1 S homeolog Neighboring gene elongation factor G, mitochondrial-like Neighboring gene latexin S homeolog Neighboring gene SHOX homeobox 2 S homeolog Neighboring gene solute carrier family 66 member 1 like S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC84816

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    arginine/serine-rich coiled-coil 1 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094310.1 → NP_001087779.1  arginine/serine-rich coiled-coil 1 S homeolog

      See identical proteins and their annotated locations for NP_001087779.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081213
      UniProtKB/TrEMBL
      Q66IS9
      Related
      ENSXLAP00005010049.1, ENSXLAT00005010208.1

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      102889843..103052251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018264500.2 → XP_018119989.1  arginine/serine-rich coiled-coil 1 S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J0VJ44
      Related
      ENSXLAP00005010064.1, ENSXLAT00005010223.1

    2. XM_041564042.1 → XP_041419976.1  arginine/serine-rich coiled-coil 1 S homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J1KRP9
      Related
      ENSXLAP00005010058.1, ENSXLAT00005010217.1

    3. XM_041564040.1 → XP_041419974.1  arginine/serine-rich coiled-coil 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1KRQ6
      Related
      ENSXLAP00005010055.1, ENSXLAT00005010214.1

    4. XM_018264503.2 → XP_018119992.1  arginine/serine-rich coiled-coil 1 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A8J0VAL0
      Related
      ENSXLAP00005010066.1, ENSXLAT00005010225.1

    5. XM_041564041.1 → XP_041419975.1  arginine/serine-rich coiled-coil 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1KRQ6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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