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    LINC01447 long intergenic non-protein coding RNA 1447 [ Homo sapiens (human) ]

    Gene ID: 101929086, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01447provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1447provided by HGNC
    Primary source
    HGNC:HGNC:50783
    See related
    Ensembl:ENSG00000236078 AllianceGenome:HGNC:50783
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01447 in Genome Data Viewer
    Location:
    7p12.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (47621939..47629893)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (47784190..47792147)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (47661537..47669491)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene tensin 3 Neighboring gene uncharacterized LOC124901629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18167 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47410550-47411140 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:47411141-47411732 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:47411733-47412323 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47419203-47420066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47440071-47440980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47442727-47443235 Neighboring gene NANOG hESC enhancer GRCh37_chr7:47459035-47459536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47486948-47487448 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47510136-47510952 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47514765-47515308 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:47519651-47520334 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:47520335-47521016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47521589-47522136 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47528112-47528658 Neighboring gene small nucleolar RNA, C/D box 151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47533187-47533778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25978 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47541736-47542333 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47542334-47542930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47543969-47544469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47558749-47559460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47559461-47560172 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47560443-47560949 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47560950-47561455 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47576373-47577246 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47595932-47596660 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47597389-47598116 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:47621045-47621582 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:47621583-47622120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25980 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:47650466-47650707 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47653818-47654364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47654365-47654909 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:47665579-47666118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47674273-47674984 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47699457-47699997 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47711792-47712670 Neighboring gene long intergenic non-protein coding RNA 2902 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:47719702-47720215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47721760-47722273 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47749727-47750441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25981 Neighboring gene Sharpr-MPRA regulatory region 2260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:47763585-47764516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:47778987-47779641 Neighboring gene long intergenic non-protein coding RNA 525

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108090.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK056440
      Related
      ENST00000429010.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      47621939..47629893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      47784190..47792147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)