U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam25a family with sequence similarity 25, member A [ Mus musculus (house mouse) ]

    Gene ID: 69134, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam25aprovided by MGI
    Official Full Name
    family with sequence similarity 25, member Aprovided by MGI
    Primary source
    MGI:MGI:1916384
    See related
    Ensembl:ENSMUSG00000043681 AllianceGenome:MGI:1916384
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam25; Fam25c; 2200001I15Rik
    Summary
    Is expressed in submandibular gland primordium and vibrissa. Orthologous to several human genes including FAM25A (family with sequence similarity 25 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in bladder adult (RPKM 211.4), liver adult (RPKM 32.3) and 1 other tissue See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fam25a in Genome Data Viewer
    Location:
    14 B; 14 20.81 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (34073842..34080296, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (34351882..34358339, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_36372 Neighboring gene glutamate dehydrogenase 1 Neighboring gene STARR-seq mESC enhancer starr_36373 Neighboring gene B-cell CLL/lymphoma 7C pseudogene Neighboring gene STARR-seq mESC enhancer starr_36378 Neighboring gene predicted gene, 53843 Neighboring gene predicted gene, 41131

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein FAM25A; protein FAM25C
    Names
    family with sequence similarity 25, member C
    protein FAM25

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183278.3NP_899101.1  protein FAM25A

      See identical proteins and their annotated locations for NP_899101.1

      Status: VALIDATED

      Source sequence(s)
      AC160930
      Consensus CDS
      CCDS36875.1
      UniProtKB/Swiss-Prot
      B2RVA0, Q8CF02
      Related
      ENSMUSP00000063140.6, ENSMUST00000052126.6
      Conserved Domains (1) summary
      pfam15825
      Location:2488
      FAM25; FAM25 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      34073842..34080296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247990.1XP_030103850.1  protein FAM25C isoform X1

      Conserved Domains (1) summary
      pfam15825
      Location:1579
      FAM25; FAM25 family