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    Hephl1 hephaestin-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 244698, updated on 9-Dec-2024

    Summary

    Official Symbol
    Hephl1provided by MGI
    Official Full Name
    hephaestin-like 1provided by MGI
    Primary source
    MGI:MGI:2685355
    See related
    Ensembl:ENSMUSG00000031936 AllianceGenome:MGI:2685355
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zp; cw; thd; Gm509; zyklopen
    Summary
    Predicted to enable ferroxidase activity. Predicted to be involved in intracellular iron ion homeostasis and iron ion transport. Predicted to act upstream of or within multicellular organismal-level iron ion homeostasis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including extraembryonic component; genitourinary system; hippocampal formation; integumental system; and retina. Orthologous to human HEPHL1 (hephaestin like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in subcutaneous fat pad adult (RPKM 2.2), mammary gland adult (RPKM 1.6) and 4 other tissues See more
    Orthologs
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    Genomic context

    See Hephl1 in Genome Data Viewer
    Location:
    9; 9 A2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (14963137..15023466, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (15051841..15112170, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA lysine 4 (anticodon CTT) Neighboring gene STARR-positive B cell enhancer ABC_E8277 Neighboring gene STARR-seq mESC enhancer starr_23366 Neighboring gene pannexin 1 Neighboring gene STARR-seq mESC enhancer starr_23367 Neighboring gene STARR-seq mESC enhancer starr_23368 Neighboring gene STARR-seq mESC enhancer starr_23369 Neighboring gene STARR-seq mESC enhancer starr_23370 Neighboring gene predicted gene, 22658 Neighboring gene predicted gene, 39293

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Phenotypes

    Associated conditions

    Description Tests
    curly whiskers
    GeneReviews: Not available

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ferroxidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ferroxidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables ferroxidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in copper ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intracellular iron ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular iron ion homeostasis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in iron ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within multicellular organismal-level iron ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    ferroxidase HEPHL1
    Names
    hephaestin-like protein 1
    tail hair depletion
    NP_001158269.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164797.1NP_001158269.1  ferroxidase HEPHL1 precursor

      See identical proteins and their annotated locations for NP_001158269.1

      Status: VALIDATED

      Source sequence(s)
      AC154295, AC156500, AK132457, BB618242
      Consensus CDS
      CCDS52725.1
      UniProtKB/Swiss-Prot
      Q3V1H3
      Related
      ENSMUSP00000124518.2, ENSMUST00000159985.2
      Conserved Domains (4) summary
      cd04222
      Location:26208
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd04224
      Location:376572
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd11022
      Location:575718
      CuRO_4_ceruloplasmin; The fourth cupredoxin domain of Ceruloplasmin
      cl19115
      Location:222362
      Cupredoxin; Cupredoxin superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      14963137..15023466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003947897.1 RNA Sequence