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    SNR5 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164980, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR5
    Primary source
    SGD:S000007291
    Locus tag
    YNCO0028W
    See related
    AllianceGenome:SGD:S000007291
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Located in nucleolus. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR5 in Genome Data Viewer
    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (842403..842606)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Caf20p Neighboring gene ncRNA Neighboring gene uroporphyrinogen-III synthase HEM4 Neighboring gene Rfm1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001147.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant. Parker R, et al. Mol Cell Biol, 1988 Aug. PMID 2905424, Free PMC Article
    2. Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs. Bortolin ML, et al. EMBO J, 1999 Jan 15. PMID 9889201, Free PMC Article
    3. The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae. Preti M, et al. Mol Cell, 2010 May 28. PMID 20513435
    4. Efficient RNA pseudouridylation by eukaryotic H/ACA ribonucleoproteins requires high affinity binding and correct positioning of guide RNA. Caton EA, et al. Nucleic Acids Res, 2018 Jan 25. PMID 29177505, Free PMC Article
    5. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. Tollervey D. EMBO J, 1987 Dec 20. PMID 3327689, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at positions U1004 and U1124

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA pseudouridylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      842403..842606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132265.1 RNA Sequence

      Status: REVIEWED

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