Trim80 tripartite motif-containing 80 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Trim80provided by MGI
Official Full Name: tripartite motif-containing 80provided by MGI
Primary source: MGI:MGI:3588186
See related: Ensembl:ENSMUSG00000070332 AllianceGenome:MGI:3588186
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Trim47l; 4933422H20Rik
Summary: Orthologous to human TRIM80P (tripartite motif containing 80, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Restricted expression toward testis adult (RPKM 138.6) See more
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Genomic context

Location:: 11 E2; 11 80.84 cM

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	11	NC_000077.7 (115331371..115339094)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	11	NC_000077.6 (115440545..115448268)

Chromosome 11 - NC_000077.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: tripartite motif protein 47-like

Names: novel zinc finger, C3HC4 type (RING finger) and SPRY domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001033775.3 → NP_001028947.1 tripartite motif protein 47-like

See identical proteins and their annotated locations for NP_001028947.1

Status: PROVISIONAL

Source sequence(s)

AL645470

Consensus CDS

CCDS36372.1

UniProtKB/TrEMBL

Q3V061

Related

ENSMUSP00000091442.5, ENSMUST00000093914.5

Conserved Domains (3) summary

pfam00643
Location:208 → 246

zf-B_box; B-box zinc finger

cl02614
Location:444 → 620

SPRY; SPRY domain

cl17238
Location:71 → 114

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...