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    Palmd palmdelphin [ Mus musculus (house mouse) ]

    Gene ID: 114301, updated on 9-Dec-2024

    Summary

    Official Symbol
    Palmdprovided by MGI
    Official Full Name
    palmdelphinprovided by MGI
    Primary source
    MGI:MGI:2148896
    See related
    Ensembl:ENSMUSG00000033377 AllianceGenome:MGI:2148896
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PALML; 4631423C22Rik
    Summary
    Predicted to be involved in regulation of cell shape. Located in cytoplasm. Is expressed in several structures, including blood; brain; eye; heart; and myotome. Orthologous to human PALMD (palmdelphin). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in subcutaneous fat pad adult (RPKM 10.9), genital fat pad adult (RPKM 8.6) and 19 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Palmd in Genome Data Viewer
    Location:
    3 G1; 3 50.49 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (116711911..116762896, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (116918262..116968952, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08799 Neighboring gene predicted gene, 29736 Neighboring gene ferric-chelate reductase 1 Neighboring gene STARR-seq mESC enhancer starr_08800 Neighboring gene RIKEN cDNA 4930455H04 gene Neighboring gene predicted gene, 32148 Neighboring gene predicted gene, 52613 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene RIKEN cDNA 1700061I17 gene Neighboring gene ADNP homeobox 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Targeted (2)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendritic spine ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    palmdelphin
    Names
    paralemmin-related

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023245.3NP_075734.3  palmdelphin

      See identical proteins and their annotated locations for NP_075734.3

      Status: VALIDATED

      Source sequence(s)
      AF263246, AK014531, AK136939, BY123980
      Consensus CDS
      CCDS17793.1
      UniProtKB/Swiss-Prot
      Q3TAG0, Q91X00, Q9D693, Q9JHU2
      UniProtKB/TrEMBL
      A0A0R4J0J0
      Related
      ENSMUSP00000044693.8, ENSMUST00000040097.14
      Conserved Domains (1) summary
      pfam03285
      Location:78480
      Paralemmin; Paralemmin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      116711911..116762896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162860.1XP_036018753.1  palmdelphin isoform X1

      Conserved Domains (1) summary
      pfam03285
      Location:1316
      Paralemmin

    RNA

    1. XR_004941264.1 RNA Sequence