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    Vmn1r42 vomeronasal 1 receptor 42 [ Mus musculus (house mouse) ]

    Gene ID: 113848, updated on 27-Nov-2024

    Summary

    Official Symbol
    Vmn1r42provided by MGI
    Official Full Name
    vomeronasal 1 receptor 42provided by MGI
    Primary source
    MGI:MGI:2148511
    See related
    Ensembl:ENSMUSG00000068232 AllianceGenome:MGI:2148511
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    V1ra1; V1ra3; V1ra6
    Summary
    Predicted to enable signaling receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and response to pheromone. Predicted to act upstream of or within sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Is expressed in vomeronasal organ sensory epithelium. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See Vmn1r42 in Genome Data Viewer
    Location:
    6 D1; 6 40.02 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (89821500..89822597, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (89844518..89845615, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 26 Neighboring gene STARR-seq mESC enhancer starr_16606 Neighboring gene vomeronasal 1 receptor, pseudogene 27 Neighboring gene STARR-seq mESC enhancer starr_16607 Neighboring gene vomeronasal 1 receptor 43 Neighboring gene vomeronasal 1 receptor 44

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within sensory perception of chemical stimulus TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vomeronasal type-1 receptor 42
    Names
    vomernasal 1 receptor Vmn1r42
    vomeronasal receptor 1 A1
    vomeronasal receptor 1 A3
    vomeronasal receptor V1RA10
    vomeronasal type-1 receptor A10
    vomeronasal type-1 receptor A6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053221.2NP_444451.2  vomeronasal type-1 receptor 42

      See identical proteins and their annotated locations for NP_444451.2

      Status: VALIDATED

      Source sequence(s)
      BC125372
      Consensus CDS
      CCDS57439.1
      UniProtKB/Swiss-Prot
      Q8VBS7, Q9EQ49
      UniProtKB/TrEMBL
      Q05A83
      Related
      ENSMUSP00000086840.3, ENSMUST00000089419.3
      Conserved Domains (1) summary
      pfam03402
      Location:54318
      V1R; Vomeronasal organ pheromone receptor family, V1R

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      89821500..89822597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)