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    Vmn1r40 vomeronasal 1 receptor 40 [ Mus musculus (house mouse) ]

    Gene ID: 113855, updated on 27-Nov-2024

    Summary

    Official Symbol
    Vmn1r40provided by MGI
    Official Full Name
    vomeronasal 1 receptor 40provided by MGI
    Primary source
    MGI:MGI:2148518
    See related
    Ensembl:ENSMUSG00000096051 AllianceGenome:MGI:2148518
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    V1rb7
    Summary
    Predicted to enable signaling receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and response to pheromone. Predicted to act upstream of or within sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Vmn1r40 in Genome Data Viewer
    Location:
    6 D1; 6 40.02 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (89688243..89692117)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (89711261..89715135)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6453 Neighboring gene thioredoxin reductase 3 Neighboring gene vomeronasal 1 receptor, pseudogene 25 Neighboring gene vomeronasal 1 receptor 41 Neighboring gene vomeronasal 1 receptor, pseudogene 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within sensory perception of chemical stimulus TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vomeronasal type-1 receptor 40
    Names
    vomernasal 1 receptor Vmn1r40
    vomeronasal 1 receptor, B7
    vomeronasal type 1 receptor B7
    vomeronasal type-1 receptor A11

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053228.1NP_444458.1  vomeronasal type-1 receptor 40

      See identical proteins and their annotated locations for NP_444458.1

      Status: PROVISIONAL

      Source sequence(s)
      AF291493
      Consensus CDS
      CCDS20346.1
      UniProtKB/Swiss-Prot
      Q9EQ46
      UniProtKB/TrEMBL
      F6MAD9, F6MAE6, F6MAE7, F6MAF3
      Related
      ENSMUSP00000074655.2, ENSMUST00000075158.2
      Conserved Domains (1) summary
      cd13949
      Location:12305
      7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      89688243..89692117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505381.3XP_006505444.1  vomeronasal type-1 receptor 40 isoform X1

      See identical proteins and their annotated locations for XP_006505444.1

      UniProtKB/Swiss-Prot
      Q9EQ46
      UniProtKB/TrEMBL
      F6MAD9, F6MAE6, F6MAE7, F6MAF3
      Conserved Domains (1) summary
      cd13949
      Location:12305
      7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily
    2. XM_006505382.3XP_006505445.1  vomeronasal type-1 receptor 40 isoform X1

      See identical proteins and their annotated locations for XP_006505445.1

      UniProtKB/Swiss-Prot
      Q9EQ46
      UniProtKB/TrEMBL
      F6MAD9, F6MAE6, F6MAE7, F6MAF3
      Related
      ENSMUSP00000154581.2, ENSMUST00000228642.2
      Conserved Domains (1) summary
      cd13949
      Location:12305
      7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily