U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Mgl2 macrophage galactose N-acetyl-galactosamine specific lectin 2 [ Mus musculus (house mouse) ]

    Gene ID: 216864, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mgl2provided by MGI
    Official Full Name
    macrophage galactose N-acetyl-galactosamine specific lectin 2provided by MGI
    Primary source
    MGI:MGI:2385729
    See related
    Ensembl:ENSMUSG00000040950 AllianceGenome:MGI:2385729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CD301b
    Summary
    Enables carbohydrate binding activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including hemolymphoid system gland; ileum; liver; lung; and male reproductive gland or organ. Orthologous to human CLEC10A (C-type lectin domain containing 10A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in bladder adult (RPKM 12.3), mammary gland adult (RPKM 12.0) and 14 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Mgl2 in Genome Data Viewer
    Location:
    11 B3; 11 42.99 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (70020953..70028368)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (70130125..70137542)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32946 Neighboring gene asialoglycoprotein receptor 2 Neighboring gene predicted gene 12311 Neighboring gene STARR-seq mESC enhancer starr_29870 Neighboring gene C-type lectin domain family 10, member A Neighboring gene STARR-seq mESC enhancer starr_29871 Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (7)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC123660, MGC123939, MGC124077

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables D-mannose binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables carbohydrate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables fucose binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables pattern recognition receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    macrophage galactose N-acetyl-galactosamine specific lectin 2
    Names
    macrophage galactose-type C-type lectin 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145137.2NP_660119.1  macrophage galactose N-acetyl-galactosamine specific lectin 2

      See identical proteins and their annotated locations for NP_660119.1

      Status: VALIDATED

      Source sequence(s)
      BC106833, BY198732, BY544307
      Consensus CDS
      CCDS24935.1
      UniProtKB/TrEMBL
      F6QSC4, Q8JZN1
      Related
      ENSMUSP00000048568.6, ENSMUST00000041550.12
      Conserved Domains (2) summary
      cd03590
      Location:189314
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:38179
      Lectin_N; Hepatic lectin, N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      70020953..70028368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006532912.2XP_006532975.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X1

      See identical proteins and their annotated locations for XP_006532975.1

      UniProtKB/TrEMBL
      A9XX86, F6QSC4
      Related
      ENSMUSP00000131344.2, ENSMUST00000165951.8
      Conserved Domains (2) summary
      cd03590
      Location:190363
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:39180
      Lectin_N; Hepatic lectin, N-terminal domain
    2. XM_006532913.4XP_006532976.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X2

      See identical proteins and their annotated locations for XP_006532976.1

      UniProtKB/TrEMBL
      F6QSC4
      Related
      ENSMUSP00000104225.2, ENSMUST00000108584.2
      Conserved Domains (2) summary
      cd03590
      Location:189362
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:38179
      Lectin_N; Hepatic lectin, N-terminal domain
    3. XM_006532915.2XP_006532978.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X5

      See identical proteins and their annotated locations for XP_006532978.1

      UniProtKB/TrEMBL
      F6QSC4
      Conserved Domains (2) summary
      cd03590
      Location:190315
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:39180
      Lectin_N; Hepatic lectin, N-terminal domain
    4. XM_017314459.1XP_017169948.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X4

      UniProtKB/TrEMBL
      Q8BUD5
      Conserved Domains (2) summary
      cd03590
      Location:159332
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:2149
      Lectin_N; Hepatic lectin, N-terminal domain
    5. XM_006532914.4XP_006532977.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X3

      See identical proteins and their annotated locations for XP_006532977.1

      UniProtKB/TrEMBL
      Q8BUD5
      Conserved Domains (2) summary
      cd03590
      Location:160333
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:2150
      Lectin_N; Hepatic lectin, N-terminal domain