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    Obp56d Odorant-binding protein 56d [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37266, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Obp56dprovided by FlyBase
    Official Full Name
    Odorant-binding protein 56dprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034470
    Locus tag
    Dmel_CG11218
    See related
    AllianceGenome:FB:FBgn0034470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    56d; BcDNA:RE22207; BEST:GH09027; CG11218; CT31326; DmelObp56d; Dmel\CG11218; obp56d; OBP56d; RH69634p
    Summary
    Predicted to enable odorant binding activity. Involved in sensory perception of smell. Predicted to be located in extracellular region. Is expressed in anterior wing margin; organism subdivision; and sense organ. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Obp56d in Genome Data Viewer
    Location:
    56E2-56E2; 2-90 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (19702924..19703915, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (15590429..15591420, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Odorant-binding protein 56b Neighboring gene Odorant-binding protein 56c Neighboring gene antisense RNA:CR44509 Neighboring gene Odorant-binding protein 56e Neighboring gene Odorant-binding protein 56f

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel odorant-binding proteins expressed in the taste tissue of the fly. Koganezawa M, et al. Chem Senses, 2002 May. PMID 12006372
    2. Association of polymorphisms in odorant-binding protein genes with variation in olfactory response to benzaldehyde in Drosophila. Wang P, et al. Genetics, 2007 Nov. PMID 17720903, Free PMC Article
    3. A Syndromic Neurodevelopmental Disorder Caused by Mutations in SMARCD1, a Core SWI/SNF Subunit Needed for Context-Dependent Neuronal Gene Regulation in Flies. Nixon KCJ, et al. Am J Hum Genet, 2019 Apr 4. PMID 30879640, Free PMC Article
    4. Proteomic analysis of individual fruit fly hemolymph. Zeng Q, et al. J Chromatogr B Analyt Technol Biomed Life Sci, 2015 Feb 15. PMID 25596379
    5. Organization and function of Drosophila odorant binding proteins. Larter NK, et al. Elife, 2016 Nov 15. PMID 27845621, Free PMC Article

    See all (64) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables odorant binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in olfactory behavior ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in response to pheromone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sensory perception of smell IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Odorant-binding protein 56d
    Names
    CG11218-PA
    CG11218-PB
    Obp56d-PA
    Obp56d-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      19702924..19703915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299690.1 → NP_001286619.1  Odorant-binding protein 56d, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286619.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8SY61, Q9V8Y4
      UniProtKB/TrEMBL
      A0A0B4LGZ8, A9QHM4
      Conserved Domains (1) summary
      pfam01395
      Location:19 → 127
      PBP_GOBP; PBP/GOBP family

    2. NM_137600.3 → NP_611444.2  Odorant-binding protein 56d, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611444.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8SY61, Q9V8Y4
      UniProtKB/TrEMBL
      A0A0B4LGZ8, A9QHM4
      Related
      FBpp0085673
      Conserved Domains (1) summary
      pfam01395
      Location:19 → 127
      PBP_GOBP; PBP/GOBP family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4LGZ8 A0A0B4LGZ8
    Q8SY61.2 Q8SY61

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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