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    CG42700 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36330, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG42700provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0261611
    Locus tag
    Dmel_CG42700
    See related
    AllianceGenome:FB:FBgn0261611
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13165; CG34233; Dmel\CG42700; ORE-16
    Old locus tag
    Dmel_CG13165; Dmel_CG34233
    Orthologs
    all
    NEW
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    Genomic context

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    See CG42700 in Genome Data Viewer
    Location:
    48F6-48F6; 2-66 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (12279771..12300795)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (8167276..8188300)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR43900 Neighboring gene Vacuolar H[+] ATPase 36kD subunit 2 Neighboring gene Calmodulin Neighboring gene antisense RNA:CR45271 Neighboring gene uncharacterized protein Neighboring gene salto Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury. Maia RM, et al. BMC Genomics, 2007 Jul 24. PMID 17650329, Free PMC Article
    2. Genome-wide RNAi analysis of growth and viability in Drosophila cells. Boutros M, et al. Science, 2004 Feb 6. PMID 14764878
    3. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42700-PC
    CG42700-PD
    CG42700-PE
    CG42700-PF
    CG42700-PG
    CG42700-PH
    CG42700-PI
    CG42700-PJ

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      12279771..12300795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299411.1 → NP_001286340.1  uncharacterized protein Dmel_CG42700, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286340.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6SUS8

    2. NM_001299409.1 → NP_001286338.1  uncharacterized protein Dmel_CG42700, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6SUS8

    3. NM_001299410.1 → NP_001286339.1  uncharacterized protein Dmel_CG42700, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286339.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4LF70

    4. NM_001201980.2 → NP_001188909.1  uncharacterized protein Dmel_CG42700, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188909.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6SUS8

    5. NM_001273986.2 → NP_001260915.1  uncharacterized protein Dmel_CG42700, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260915.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KFQ9

    6. NM_136910.3 → NP_610754.1  uncharacterized protein Dmel_CG42700, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610754.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8V8
      Related
      FBpp0292049

    7. NM_001273988.1 → NP_001260917.1  uncharacterized protein Dmel_CG42700, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260917.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KEN0

    8. NM_001273987.1 → NP_001260916.1  uncharacterized protein Dmel_CG42700, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260916.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KFG4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KEN0 A0A0B4KEN0
    A0A0B4KFG4 A0A0B4KFG4
    A0A0B4KFQ9 A0A0B4KFQ9
    A0A0B4LF70 A0A0B4LF70
    A1Z8V8 A1Z8V8
    C6SUS8 C6SUS8

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